Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8 134 2e-26 seq5 118 1e-21 seq2 116 5e-21 seq3 113 6e-20 seq6 107 2e-18 seq7 104 3e-17 >seq8 Length=41758685 Score = 134 bits (148), Expect = 2e-26 Identities = 305/451 (68%), Gaps = 16/451 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| |||||| | | ||| ||||| Sbjct 1370812 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTTGCA 1370871 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| | ||| || |||| ||||| ||||||||||| ||||| |||||| Sbjct 1370872 GCAACAACAATGACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGG 1370928 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 || | || || || | ||||||||| || |||| |||| | | ||| | Sbjct 1370929 TTCAAGGTCTGCTCTCTTTCATCATTACCT---CCACCAATCCCAGTCCCTCTCTGCCTA 1370985 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTC 16117 || || ||||||||||| || | ||||| ||||| || ||| || || | ||| Sbjct 1370986 CCAACAGCATCAATCTCGTCCACAAAGACAATGCACGGCGCATTCTCCTTAGCCTTCTTG 1371045 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 ||| ||||| || || | | || || ||||| ||||||||||| || || | | | Sbjct 1371046 AAA-AGATCACGCACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGACCC 1371104 Query 16178 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 | | || | | ||| || ||| | |||||| ||||||||| ||| | || || | Sbjct 1371105 CG-AGATGGAAAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGGGTTT 1371163 Query 16237 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAA 16296 |||| ||||| || ||| |||||||| ||||| || ||| ||||| || Sbjct 1371164 TACCAGTACCGGGAGGACCAACGAGGAGGACACCTTTAGGGATCCGAGCGCCGACCGCAG 1371223 Query 16297 AGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | |||||||| | ||| ||||| ||||| Sbjct 1371224 TGAACCTCTCAGGCTTCTTGAGAAACTCCAC 1371254 >seq5 Length=46902585 Score = 118 bits (130), Expect = 1e-21 Identities = 299/449 (67%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | | | ||| ||||| |||||| | | || ||||| Sbjct 2378409 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 2378468 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | || | || ||| |||| | || |||||||||||||||| |||| |||||||| Sbjct 2378469 GCAACCACGATAACACCAGTGTTACCTT--CAAAACCATCCATCTCCGTCAGAAGCTGGT 2378526 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTC 16059 ||| || ||||| | ||||||||| || ||| ||||| | | ||| | | Sbjct 2378527 TAAGCGTCTGTTCTCTTTCATCATTACCT---CCACCGATACCAGTCCCTCTCTGCCTAC 2378583 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 | || |||||||||||||||| ||||| || || || || || || || | Sbjct 2378584 CAACAGCATCAATCTCATCAACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGA 2378643 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | ||||| || || | | || || ||||| ||||||||||| ||||| | | | | Sbjct 2378644 AAAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCG 2378703 Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 | || | | ||| || ||| || |||||| |||||||| || | || || || Sbjct 2378704 -AGATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTC 2378762 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 16298 || ||||| || ||| |||| || ||||| || ||| || || || | Sbjct 2378763 CCAGTACCGGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTG 2378822 Query 16299 TATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | |||||||| | ||| ||||| ||||| Sbjct 2378823 AACCTCTCAGGCTTCTTCAGAAACTCCAC 2378851 Score = 118 bits (130), Expect = 1e-21 Identities = 299/449 (67%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | | | ||| ||||| |||||| | | || ||||| Sbjct 2391790 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 2391849 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | || | || ||| |||| | || |||||||||||||||| |||| |||||||| Sbjct 2391850 GCAACCACGATAACACCAGTGTTACCTT--CAAAACCATCCATCTCCGTCAGAAGCTGGT 2391907 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTC 16059 ||| || ||||| | ||||||||| || ||| ||||| | | ||| | | Sbjct 2391908 TAAGCGTCTGTTCTCTTTCATCATTACCT---CCACCGATACCAGTCCCTCTCTGCCTAC 2391964 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 | || |||||||||||||||| ||||| || || || || || || || | Sbjct 2391965 CAACAGCATCAATCTCATCAACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGA 2392024 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | ||||| || || | | || || ||||| ||||||||||| ||||| | | | | Sbjct 2392025 AAAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCG 2392084 Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 | || | | ||| || ||| || |||||| |||||||| || | || || || Sbjct 2392085 -AGATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTC 2392143 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 16298 || ||||| || ||| |||| || ||||| || ||| || || || | Sbjct 2392144 CCAGTACCGGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTG 2392203 Query 16299 TATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | |||||||| | ||| ||||| ||||| Sbjct 2392204 AACCTCTCAGGCTTCTTCAGAAACTCCAC 2392232 Score = 114 bits (126), Expect = 2e-20 Identities = 141/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 102123 CAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAG 102182 ||||||||||| | ||||| |||| |||| | || | || | |||| || ||| Sbjct 19044319 CAAAAGAAAGCTCAGTGGGCGATGACGTGGATCGACGGA---TCTCAGACCTTCGCGGAG 19044263 Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 | | |||| || || || || || ||||||||||||||| ||||||| | || Sbjct 19044262 AGGAGCGTCGCCTTCGCCTGCTCCGAAGGGATCTTCTTCTCTGGTAGCTTCTGCTCGATC 19044203 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | ||||||||||| ||||| |||||||| ||| | ||||||||||||| | |||||| Sbjct 19044202 TTCTGGCTCAAGAAACGAGGGCTCATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCT 19044143 Query 102303 CGTGACGAGGGA 102314 || ||||| ||| Sbjct 19044142 CGAGACGACGGA 19044131 >seq2 Length=52886895 Score = 116 bits (128), Expect = 5e-21 Identities = 143/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 ||||| || | ||||| ||||||||| | || | || | | || || ||| | Sbjct 45187180 AAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA---TCTCAGACTTTCGCCGAGAGG 45187124 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || | || || || || || || || ||||||||||| ||| ||||||| | || | Sbjct 45187123 ATCGTGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTC 45187064 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 |||||||||||||| || |||||||| || ||| ||||||||||||||| ||||| || Sbjct 45187063 TGGCTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGA 45187004 Query 102306 GACGAGGGACTCCAC 102320 ||||| || || ||| Sbjct 45187003 GACGAAGGCCTTCAC 45186989 >seq3 Length=64984695 Score = 113 bits (124), Expect = 6e-20 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 102123 CAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAG 102182 ||||||||||| | ||||| |||| |||| | || | || | |||| || ||| Sbjct 52385827 CAAAAGAAAGCTCAGTGGGCGATGACGTGGATCGACGGA---TCTCAGACCTTCGCGGAG 52385883 Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 | |||| ||||| || | || || ||||||||||| ||| ||||||| | || Sbjct 52385884 AGGAGTGTCGCCTTTGCCTGCGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATC 52385943 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | ||||||||||| ||||| |||||||| ||| | ||||||||||||| | |||||| Sbjct 52385944 TTCTGGCTCAAGAAACGAGGGCTCATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCT 52386003 Query 102303 CGTGACGAGGG 102313 || ||||| || Sbjct 52386004 CGAGACGACGG 52386014 >seq6 Length=39822476 Score = 107 bits (118), Expect = 2e-18 Identities = 218/321 (68%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| ||||| || || |||| ||||||||| || Sbjct 32773955 AAACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT-- 32774012 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | || || ||||||||||||||||| || || || Sbjct 32774013 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATAAAAACAATA 32774072 Query 16092 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 || || ||| || || | || || | ||||| || | ||| ||||| Sbjct 32774073 CAAGGCGCCTTGGCCTTGGCCTTC----TCGAACAAATCCCTAACCCTAGAGGCACCCAC 32774128 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 |||||| || | ||| ||||| | | || | || || ||| || || | ||| Sbjct 32774129 ACCAACGAAAAGCTCAACAAACTCAGACGCCGCGCAGGAGAAGAACGGCACTCCGGCTTC 32774188 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 || || | |||| || | ||||||||||| || || || |||| ||||||| Sbjct 32774189 TCCAGCCACAGCTCTAGCTAACAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGAGACA 32774248 Query 16268 ACCTCGTGGAATCTTGGCGCC 16288 ||| |||||||||||||| Sbjct 32774249 CCCTTTGGGAATCTTGGCGCC 32774269 >seq7 Length=48366697 Score = 104 bits (114), Expect = 3e-17 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 ||||| || | ||||| |||| |||| | ||| | || | | || || ||| | Sbjct 33024143 AAGAAGGCCCAATGGGCCATGACGTGGATCGATGGA---TCTCAGACTTTCGCCGAGAGG 33024087 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || |||| || || || || || || ||||||||||| ||| ||||||| | || | Sbjct 33024086 ATCGTCGCCTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTC 33024027 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||||| ||||||||||| |||||||| || | ||||||||||||| | ||||| || Sbjct 33024026 TGGCTTAAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCCCGA 33023967 Query 102306 GACGAGGG 102313 ||||| || Sbjct 33023966 GACGAAGG 33023959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620487228317920