Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5 131 2e-25 seq2 96.9 4e-15 seq8 95.1 1e-14 seq7 89.7 6e-13 >seq5 Length=46902585 Score = 131 bits (144), Expect = 2e-25 Identities = 295/438 (67%), Gaps = 8/438 (2%) Strand=Plus/Plus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 ||||||||||| | | ||| || || |||| || | || ||||| | | || ||| Sbjct 2378442 TCAAGAATATCAGCTCTGTTGGTTGCAGCAACCACGATAACACCAGTGTTACCTTCAAAA 2378501 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATA 11655 || ||||| || || ||||||||||| | ||||||||| | ||||| || | | | Sbjct 2378502 CCATCCATCTCCGTCAGAAGCTGGTTAAGCGTCTGTTCTCTTTCATCATT--ACCTCC-A 2378558 Query 11656 CC---ACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACAC 11712 || ||| | | | || | |||| ||||| ||||||||||| | || || ||||| Sbjct 2378559 CCGATACCAGTCCCTCTCTGCCTACCAACAGCATCAATCTCATCAACAAAGACAATACAA 2378618 Query 11713 GGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACG 11772 || ||| | |||| || |||||| ||||| || | | || |||||||| || Sbjct 2378619 GGAGCGTTCTCCTTGGCCTTTTTGAAAAGATCACGGACCCTCGAAGCACCAACACCGACA 2378678 Query 11773 AACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCG 11832 ||||||||||| || | | | || || ||| || ||| || |||||||| Sbjct 2378679 AACATCTCAACAAACTCAGACCCCGAGATGGAAAAGAAAGGTACACCAGCTTCACCAGCA 2378738 Query 11833 ATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGG 11892 ||||| || | ||| || || || ||||| || | |||| ||||||| | || Sbjct 2378739 ATGGCCTTTGCCAAGAGTGTTTTCCCAGTACCGGGAGGACCAACGAGAAGAACACCTTTC 2378798 Query 11893 GGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 |||||| ||||| || | | | |||||||||||| || || ||||| | ||| Sbjct 2378799 GGGATCCGAGCACCGACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCC 2378858 Query 11953 -TCAAGTTCCTCCTTGGC 11969 | ||| || | |||||| Sbjct 2378859 ATGAAG-TCTTGCTTGGC 2378875 Score = 131 bits (144), Expect = 2e-25 Identities = 295/438 (67%), Gaps = 8/438 (2%) Strand=Plus/Plus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 ||||||||||| | | ||| || || |||| || | || ||||| | | || ||| Sbjct 2391823 TCAAGAATATCAGCTCTGTTGGTTGCAGCAACCACGATAACACCAGTGTTACCTTCAAAA 2391882 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATA 11655 || ||||| || || ||||||||||| | ||||||||| | ||||| || | | | Sbjct 2391883 CCATCCATCTCCGTCAGAAGCTGGTTAAGCGTCTGTTCTCTTTCATCATT--ACCTCC-A 2391939 Query 11656 CC---ACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACAC 11712 || ||| | | | || | |||| ||||| ||||||||||| | || || ||||| Sbjct 2391940 CCGATACCAGTCCCTCTCTGCCTACCAACAGCATCAATCTCATCAACAAAGACAATACAA 2391999 Query 11713 GGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACG 11772 || ||| | |||| || |||||| ||||| || | | || |||||||| || Sbjct 2392000 GGAGCGTTCTCCTTGGCCTTTTTGAAAAGATCACGGACCCTCGAAGCACCAACACCGACA 2392059 Query 11773 AACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCG 11832 ||||||||||| || | | | || || ||| || ||| || |||||||| Sbjct 2392060 AACATCTCAACAAACTCAGACCCCGAGATGGAAAAGAAAGGTACACCAGCTTCACCAGCA 2392119 Query 11833 ATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGG 11892 ||||| || | ||| || || || ||||| || | |||| ||||||| | || Sbjct 2392120 ATGGCCTTTGCCAAGAGTGTTTTCCCAGTACCGGGAGGACCAACGAGAAGAACACCTTTC 2392179 Query 11893 GGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 |||||| ||||| || | | | |||||||||||| || || ||||| | ||| Sbjct 2392180 GGGATCCGAGCACCGACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCC 2392239 Query 11953 -TCAAGTTCCTCCTTGGC 11969 | ||| || | |||||| Sbjct 2392240 ATGAAG-TCTTGCTTGGC 2392256 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAG--CAAAGTCCAGGCATGAGTCCTCTTT 119571 || || || |||||||| | ||| || |||| |||| ||||||||||| |||| || Sbjct 19044132 CCGTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAA--CCAGGCATGAGCCCTCGTT 19044189 Query 119572 TCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGA 119631 |||| ||||| ||||| | || || || ||||| |||||||| || || ||||||| Sbjct 19044190 TCTTGAGCCAGAAGATCGAGCAGAAGCTACCAGAGAAGAAGATCCCTTCGGAGCAGGCGA 19044249 Query 119632 AAGCGAATAGACGCTCAGCAAAAGGTC-GAGACTTGTCGAACCACTTGAGAGCCCA 119686 | |||| | ||| || |||||| |||| ||||| |||| | | ||||| Sbjct 19044250 AGGCGACGCTCCTCTCCGC-GAAGGTCTGAGATCCGTCGATCCACGTCATCGCCCA 19044304 >seq2 Length=52886895 Score = 96.9 bits (106), Expect = 4e-15 Identities = 208/311 (67%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 119385 CACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 || || || || ||| || || | | ||||||||||||| || || |||||| || Sbjct 45186867 CAAGGAAGCGCGTCGCAGACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGAC 45186926 Query 119445 TGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCT 119504 | | ||| |||| | || | |||||||| || | | | || || || Sbjct 45186927 TTCACGCGCTCTTCCGATAGCTTCGTCCTCAAGAGGGTATAGATCAGGCACGCGAAGTCG 45186986 Query 119505 TGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGT 119564 ||||| ||||| || || ||||| ||||| || |||| || || |||||||| Sbjct 45186987 CAGTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGC 45187046 Query 119565 CCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624 || | ||||| ||||| ||||| | || || || || || |||||||| || || || Sbjct 45187047 CCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACG 45187106 Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCC 119684 || ||||| || | | | ||| || |||| |||| ||||| |||||| | ||| Sbjct 45187107 CAAGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGATCCGTCGATCCACTTCATGGCC 45187166 Query 119685 CAGTTGGCCTT 119695 || | |||||| Sbjct 45187167 CATTGGGCCTT 45187177 >seq8 Length=41758685 Score = 95.1 bits (104), Expect = 1e-14 Identities = 293/449 (65%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | || ||||||||||| | | || || || Sbjct 1370812 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTTGCA 1370871 Query 11563 GCAATGACTACAATG---CCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 |||| | |||||| ||||| | | || || || ||||| || || | |||||| Sbjct 1370872 GCAA---CAACAATGACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGG 1370928 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA---CCTGCCGAACGCTTCTTA 11676 || | ||||| || | ||||| || | | |||| || | | | || | || Sbjct 1370929 TTCAAGGTCTGCTCTCTTTCATCATT--ACCTCC-ACCAATCCCAGTCCCTCTCTGCCTA 1370985 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || ||||| |||||||| || | || || || ||||| || | |||| | | Sbjct 1370986 CCAACAGCATCAATCTCGTCCACAAAGACAATGCACGGCGCATTCTCCTTAGCCTTCTTG 1371045 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 ||||| ||||| || | | || |||||||| || |||||||||||||| | | | Sbjct 1371046 AAAAGATCACGCACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGACCCC 1371105 Query 11797 GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 || || ||| || ||| | |||||||| |||||| || | ||| || ||| Sbjct 1371106 GAGATGGAAAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGGGTTTTA 1371165 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || ||||| || | |||| |||| ||| | || |||||| || || || | Sbjct 1371166 CCAGTACCGGGAGGACCAACGAGGAGGACACCTTTAGGGATCCGAGCGCCGACCGCAGTG 1371225 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 | | ||||||||||||||| || ||||| Sbjct 1371226 AACCTCTCAGGCTTCTTGAGAAACTCCAC 1371254 >seq7 Length=48366697 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || || ||||| | ||| || |||| | ||||||||||| |||| ||| Sbjct 33023959 CCTTCGTCTCGGGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 33024018 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||| | || || || || || |||||||| || || || || ||||| Sbjct 33024019 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 33024078 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTTGGCC 119693 |||| | | ||| || |||| |||| |||| |||| | | ||||| | |||| Sbjct 33024079 GCGACGATCCTCTCGGCGAAAGTCTGAGATCCATCGATCCACGTCATGGCCCATTGGGCC 33024138 Query 119694 TTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTG 119737 || | | | ||| |||| |||| || || |||||| || Sbjct 33024139 TTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAAAGGTG 33024182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588733886690800