Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 132 6e-26 seq8 129 7e-25 seq5 129 7e-25 seq2 104 3e-17 seq4 89.7 6e-13 seq7 87.8 2e-12 >seq6 Length=39822476 Score = 132 bits (146), Expect = 6e-26 Identities = 223/318 (70%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || ||||| || || |||| ||||||||| || Sbjct 32773955 AAACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT-- 32774012 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | || || ||||||||||||||||| || |||||| Sbjct 32774013 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATAAAAACAATA 32774072 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || | ||| | || || | ||| | |||||| ||| ||||||||| Sbjct 32774073 CAAGGCGCCTTGGCCTTGGCCTTCTCGAACAAATCCCTAACCCTAGAGGCACCCACACCA 32774132 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518 || || | ||| ||||| | | || | || || ||| || || | ||| || Sbjct 32774133 ACGAAAAGCTCAACAAACTCAGACGCCGCGCAGGAGAAGAACGGCACTCCGGCTTCTCCA 32774192 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 || | |||| || | ||||||||||| || || || |||| |||||| | ||||| Sbjct 32774193 GCCACAGCTCTAGCTAACAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGA-GACACCC 32774251 Query 9579 CGT-GGAATCTTGGCGCC 9595 | |||||||||||||| Sbjct 32774252 TTTGGGAATCTTGGCGCC 32774269 >seq8 Length=41758685 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| |||||| | | ||| || || Sbjct 1370812 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTTGCA 1370871 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| | ||| || | | ||||| ||||||||||| ||||| || ||||| Sbjct 1370872 GCAACAACAATGACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGGTTC 1370931 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || || || | ||||||||| || |||| |||| | | ||| | || Sbjct 1370932 AAGGTCTGCTCTCTTTCATCATTACCT---CCACCAATCCCAGTCCCTCTCTGCCTACCA 1370988 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||||||||| || | |||||||| || || ||| || || | | || Sbjct 1370989 ACAGCATCAATCTCGTCCACAAAGACAATGCACGGCGCATTCTCCTTAGCCTTCTTGAAA 1371048 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || ||||| || || ||||| ||||||||||| || || | | | | | Sbjct 1371049 AGATCACGCACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGACCCCG-A 1371107 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | ||| || ||| | |||||| ||||||||| ||| | || || ||||| Sbjct 1371108 GATGGAAAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGGGTTTTACC 1371167 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| |||||||| |||| || ||| ||||| || | | Sbjct 1371168 AGTACCGGGAGGACCAACGAGGAGGACACCTTTAGGGATCCGAGCGCCGACCGCAGTGAA 1371227 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||||||||| ||||| Sbjct 1371228 CCTCTCAGGCTTCTTGAGAAACTCCAC 1371254 >seq5 Length=46902585 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | | | ||| ||||| |||||| | | || || || Sbjct 2378409 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 2378468 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| ||| |||||| Sbjct 2378469 GCAACCACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGGTTA 2378528 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || ||| ||||| | | ||| | || Sbjct 2378529 AGCGTCTGTTCTCTTTCATCATTACCTCC---ACCGATACCAGTCCCTCTCTGCCTACCA 2378585 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||||||||||| ||||||||||| || || || ||| ||| || Sbjct 2378586 ACAGCATCAATCTCATCAACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAA 2378645 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || ||||| || || ||||| ||||||||||| ||||| | | | | | Sbjct 2378646 AGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCG-A 2378704 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | ||| || ||| || |||||| |||||||| || | || || || || Sbjct 2378705 GATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCC 2378764 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| |||| || |||| || ||| || || || | | Sbjct 2378765 AGTACCGGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAA 2378824 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| ||||| ||||| Sbjct 2378825 CCTCTCAGGCTTCTTCAGAAACTCCAC 2378851 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | | | ||| ||||| |||||| | | || || || Sbjct 2391790 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 2391849 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| ||| |||||| Sbjct 2391850 GCAACCACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGGTTA 2391909 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || ||| ||||| | | ||| | || Sbjct 2391910 AGCGTCTGTTCTCTTTCATCATTACCTCC---ACCGATACCAGTCCCTCTCTGCCTACCA 2391966 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||||||||||| ||||||||||| || || || ||| ||| || Sbjct 2391967 ACAGCATCAATCTCATCAACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAA 2392026 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || ||||| || || ||||| ||||||||||| ||||| | | | | | Sbjct 2392027 AGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCG-A 2392085 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | ||| || ||| || |||||| |||||||| || | || || || || Sbjct 2392086 GATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCC 2392145 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| |||| || |||| || ||| || || || | | Sbjct 2392146 AGTACCGGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAA 2392205 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| ||||| ||||| Sbjct 2392206 CCTCTCAGGCTTCTTCAGAAACTCCAC 2392232 >seq2 Length=52886895 Score = 104 bits (114), Expect = 3e-17 Identities = 141/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || ||||| || || || || || |||||| || || |||||||| || Sbjct 45186989 GTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 45187048 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | |||||| |||||||||||||| || || || || Sbjct 45187049 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCA 45187108 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || ||||| | | | ||||||||| | |||| | ||| | ||| ||||| || Sbjct 45187109 AGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 45187165 Query 117465 CCATTTCGCCTTCTTC 117480 ||||| ||||||||| Sbjct 45187166 CCATTGGGCCTTCTTC 45187181 >seq4 Length=53719093 Score = 89.7 bits (98), Expect = 6e-13 Identities = 290/447 (65%), Gaps = 14/447 (3%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| || ||||| | ||| | || ||||| || || | | ||| ||||| || Sbjct 12371550 TCAAACCGTCCTGGCCTAAGCAAAGCAGAGTCAAGAATGTCTGCTCTATTGGTCGCAGCA 12371609 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | || | ||||| || | | ||||| ||||||||||| || || || ||||| | | Sbjct 12371610 ACAACGATGATACCAGTGTTACCTTCAAACCCATCCATCTCAGTTAACAGCTGGTTCAAA 12371669 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9368 || ||||| | || ||||| || ||||| | | ||| | ||| | || Sbjct 12371670 GTCTGTTCTCTCTCGTCATTACCT------CCACCGATCCCTGTCCCTCTCTGCCTACCA 12371723 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 ||||| ||||||||||| | |||||||| || || || || ||| | | || Sbjct 12371724 ACGGCGTCAATCTCATCTACAAAGACAATGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAA 12371783 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || ||||| || || ||||| |||||||| || || || | | ||| | Sbjct 12371784 AGATCACGGACCCTGGAAGCACCAACACCGACAAACATTTCAACGAACTCAGACCCGG-A 12371842 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | || ||| || || || |||||| || || ||| || | ||| || || || Sbjct 12371843 GATGGAGAAGAAAGGCACGCCAGCTTCACCAGCGATAGCTTTCGCCAAAAGCGTTTTCCC 12371902 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| || || | ||| || ||| || ||| | | | Sbjct 12371903 AGTACCGGGAGGACCAATAAGCAGAACTCCCTTCGGGATCCGAGCACCAACCGCGGTGAA 12371962 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||||||||| | ||| ||||| ||||| Sbjct 12371963 TCTCTCAGGCTTCTTCAGAAACTCCAC 12371989 >seq7 Length=48366697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || |||||||| || | || || |||||| || || |||||||| || |||||| Sbjct 33023959 CCTTCGTCTCGGGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 33024018 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | |||||| |||||||||||||| || || || || || || Sbjct 33024019 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 33024078 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | | | ||||||||| | |||| | || | ||| |||| ||||||| Sbjct 33024079 GCGACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACGTCATGGCCCATTGG 33024135 Query 117472 GCCTTCTTC 117480 ||||||||| Sbjct 33024136 GCCTTCTTC 33024144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589738273642640