Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3 581 4e-161 seq5 358 8e-94 seq6538 127 2e-24 seq4 114 2e-20 seq9 109 7e-19 seq1 100 3e-16 seq32886 82.4 9e-11 >seq3 Length=64984695 Score = 581 bits (644), Expect = 4e-161 Identities = 739/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | |||||||| || ||||| || |||||||| Sbjct 33666133 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 33666074 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| | || | ||||| ||| |||| || || || ||| Sbjct 33666073 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 33666014 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| || || |||||||| |||||| | || ||| ||||| | Sbjct 33666013 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 33665954 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || || || || || || |||||| | | | | |||||| | | |||| |||||| Sbjct 33665953 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 33665894 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 |||||||| || || ||||| || ||| ||| | || || || ||||||||||| Sbjct 33665893 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 33665834 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782 || | |||||| || ||||| | || ||||||||| | | ||||||||||||||||| Sbjct 33665833 GCTCACCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33665774 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 ||| || | | ||||| || ||||| || || || || ||||| |||||||| || || Sbjct 33665773 TCTGTTCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 33665715 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 ||||| ||||| || ||||| || || ||||| |||||||||||||||| ||||| || Sbjct 33665714 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 33665655 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 ||| ||||| || || || ||| | ||||| |||| || |||||||||||||| | || Sbjct 33665654 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 33665595 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 || || ||||||||||| || |||||| | ||||| | || | | | || ||||| Sbjct 33665594 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCA 33665535 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 |||| || || || |||||| | | | |||| ||||| |||||||| ||| || Sbjct 33665534 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33665475 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | ||||||||| |||||||| ||||||||||| || || |||||||| ||||| Sbjct 33665474 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33665415 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 || ||||| || |||| ||| |||||| | ||||| |||||||||||| | ||||| Sbjct 33665414 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33665355 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 || || | ||| | |||| ||| | | || | | ||||| ||| | ||||| || Sbjct 33665354 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 33665295 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 ||| |||||||| || ||||| |||||| | ||| | ||||| || || || ||||| || Sbjct 33665294 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 33665235 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 ||| || || || ||||| || || |||||| | || || ||| | || | ||||| Sbjct 33665234 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 33665175 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| ||| || | ||||||||||| || |||| | || ||||| || Sbjct 33665174 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33665121 >seq5 Length=46902585 Score = 358 bits (396), Expect = 8e-94 Identities = 425/576 (74%), Gaps = 0/576 (0%) Strand=Plus/Plus Query 181861 TCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCG 181920 ||| || || ||||| |||||||||||||||| ||||| ||||| ||||| || || || Sbjct 22000793 TCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCG 22000852 Query 181921 CTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGG 181980 ||| | ||||| |||| || |||||||||||||| | || || || ||||||||||| Sbjct 22000853 ATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGG 22000912 Query 181981 TGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAA 182040 || |||||| | ||||| | || | | | ||| ||||| |||| || || || || Sbjct 22000913 AGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAA 22000972 Query 182041 TACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGA 182100 |||| | | | |||| ||||| |||||||| ||| || || | ||||||||| Sbjct 22000973 TACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGC 22001032 Query 182101 AGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGC 182160 |||||||| ||||||||||| || || |||||||| ||||| || ||||| || |||| Sbjct 22001033 CGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGC 22001092 Query 182161 GTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTG 182220 ||| |||||| | ||||| |||||||||||| | ||||| || || | ||| | || Sbjct 22001093 TTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATG 22001152 Query 182221 GACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATC 182280 || ||| | | || | | ||||| ||| | ||||| ||||| |||||||| || || Sbjct 22001153 GATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTC 22001212 Query 182281 CCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCT 182340 ||| |||||| | ||| | ||||| || || || ||||| ||||| || || || ||||| Sbjct 22001213 CCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCT 22001272 Query 182341 CTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGT 182400 || || |||||| | || || ||| | || | ||||| || ||||| ||| || | Sbjct 22001273 TTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTAT 22001332 Query 182401 GTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 ||||||||||| || |||| | || ||||| || Sbjct 22001333 ATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 22001368 >seq6538 Length=695 Score = 127 bits (140), Expect = 2e-24 Identities = 213/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | |||||||| || ||||| || |||||||| Sbjct 388 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 447 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| || || | ||||| ||| |||| || || || ||| Sbjct 448 CTATTGCTCTTTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 507 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| || || |||||||| |||||| | || ||| ||||| | Sbjct 508 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 567 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || || || || || || |||||| | | | | |||| | | | |||| |||||| Sbjct 568 ACCGCTGCAGTTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGT 627 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 |||||||| || || || ||| || ||| ||| | || || || ||||||||||| Sbjct 628 CCTGAAGCACAAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 687 Query 181724 GCGCTCCA 181731 || || || Sbjct 688 GCTCTTCA 695 >seq4 Length=53719093 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || |||||||| || ||||| || | || || || || |||||||| ||| |||| Sbjct 20464597 CTAGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCCTGC 20464656 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || |||||||| |||||| ||| | ||| | || || ||||| || || |||||| Sbjct 20464657 TCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTC 20464716 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | | |||||||||||| || |||| ||||||||||| Sbjct 20464717 GATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTAC 20464769 >seq9 Length=54679868 Score = 109 bits (120), Expect = 7e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || |||||||| || ||||| ||| | || || || || |||||||||||| | || Sbjct 13977646 CTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGC 13977587 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || |||||||| |||||| ||| | |||| | || || ||||| || || |||||| Sbjct 13977586 TCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTCTGTTGACCAGTCTGACCAGAGTTTCCTC 13977527 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | | ||| || ||||| || |||| |||||||| || Sbjct 13977526 GATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCAAC 13977474 >seq1 Length=43764888 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || |||||||| || ||||| ||| | || || || || |||||||| ||| | || Sbjct 27930559 CTCGACGCTGCGGAAGAAGCCGGGATCGACTTGCCTTACTCTTGCCGTGCTGGTTCGTGC 27930618 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || |||||||| || ||| ||| | ||| | || || ||||| || || |||||| Sbjct 27930619 TCAAGCTGTGCCGGCAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTC 27930678 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | | ||| || ||||| || |||| ||||||||||| Sbjct 27930679 GATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCTAC 27930731 >seq32886 Length=360271 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 125979 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 126038 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 126039 CCTACTTGGGGAG 126051 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 296011 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 296070 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 296071 CCTACTTGGGGAG 296083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610145881135440