Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3 381 7e-101 seq5 233 2e-56 seq6538 123 3e-23 >seq3 Length=64984695 Score = 381 bits (422), Expect = 7e-101 Identities = 706/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || || || || || |||| ||||||||| Sbjct 33666133 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 33666074 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 33666073 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 33666014 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | ||| || ||| | || || || || || || Sbjct 33666013 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 33665954 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || |||||||| || |||| | | | ||| | | |||| || ||||| Sbjct 33665953 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 33665894 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| |||||||| ||| | || ||| | ||| ||||| Sbjct 33665893 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 33665834 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || || || | || | | | |||||||| ||| | | |||||||| | || || Sbjct 33665833 GCTCACCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33665774 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 33665773 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 33665714 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 ||||||| || |||||||||||||| |||||||||| || || || ||| Sbjct 33665713 TCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 33665654 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || || || || ||||| | ||| | || | ||||| || || || |||||||| Sbjct 33665653 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 33665594 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| || || || |||| || | || | ||||| || |||||| Sbjct 33665593 CCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCAT 33665534 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 ||||| || || | || || || | ||||| || |||| | Sbjct 33665533 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 33665491 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||| ||||||||||| ||| | || || || | ||||||||||| ||| | Sbjct 33665490 CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 33665435 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || |||||||| || ||||| ||||||| || || ||| | | ||| Sbjct 33665434 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 33665375 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 33665374 CATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 33665315 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 |||||||| | ||||| | || || || || || || || || || | ||||| ||| Sbjct 33665314 GGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 33665255 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || || || || ||||||||||| ||||| ||||| ||| | || |||||||| | || Sbjct 33665254 GATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCT 33665195 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548 |||||| | | || || || ||||| ||| | ||||||| || || || ||||| Sbjct 33665194 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 33665135 Query 171549 AGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 33665134 CGTGGAAACGCTCTTTAA 33665117 >seq5 Length=46902585 Score = 233 bits (258), Expect = 2e-56 Identities = 410/601 (68%), Gaps = 21/601 (3%) Strand=Plus/Plus Query 170966 TCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCG 171025 |||||||||||| |||||||||| || || || ||||| || || || ||||| Sbjct 22000793 TCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCG 22000852 Query 171026 TTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGG 171085 | ||| | || | ||||| || || || |||||||| |||||||| |||||||| Sbjct 22000853 ATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGG 22000912 Query 171086 TGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAA 171145 || || || |||| || | || | |||||||| ||||||||||| || || | || Sbjct 22000913 AGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAA 22000972 Query 171146 CACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAACATTCCG 171205 || || | |||||| | | || || |||| ||||||| Sbjct 22000973 TACTTTATTTGAAGAT------GGTGATGGTGCAAATA---------------CATTCCG 22001011 Query 171206 TGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAGATTCTG 171265 ||| ||| | || || || | ||||||||||| ||| | || || ||| | || || Sbjct 22001012 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 22001071 Query 171266 GTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTT 171325 |||||| || ||||| ||||||| || || ||| | | ||||| ||| ||||||| || Sbjct 22001072 GTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 22001131 Query 171326 CGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCT 171385 || || || | ||| | |||| || | || | || |||||||| | ||||| Sbjct 22001132 TGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCT 22001191 Query 171386 CAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGAC 171445 | || || || || || || || || || | ||||| ||||| || || || ||||| Sbjct 22001192 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGAC 22001251 Query 171446 TTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGA 171505 |||||| ||||| ||||| ||| | || |||||||| | || |||||| | | || Sbjct 22001252 TTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGA 22001311 Query 171506 CCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTA 171565 || || ||||| ||| | ||||||| || || || ||||| | || ||||| ||||| Sbjct 22001312 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 22001371 Query 171566 A 171566 | Sbjct 22001372 A 22001372 >seq6538 Length=695 Score = 123 bits (136), Expect = 3e-23 Identities = 211/304 (69%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || || || || || |||| ||||||||| Sbjct 388 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 447 Query 170589 CTTTTACTTCTGCCTTGTGC--ATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCT 170646 || || || | |||||||| || || | | || ||||||||| ||| || |||| Sbjct 448 CTATTGCTCTTTCCTTGTGCCAATTCCGCTT--TGGGGGGTTGGTTCACAGGTACAACCT 505 Query 170647 TCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCC 170706 | || || ||||||||||| ||||| | ||| || ||| | || || || || || Sbjct 506 TTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTT 565 Query 170707 TAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGG 170766 |||| || |||||||| || |||| | | | ||| | | |||| || |||| Sbjct 566 TAACCGCTGCAGTTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGG 625 Query 170767 GACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTG 170826 | |||||||||||||| || |||||||| ||| | || ||| | ||| |||| Sbjct 626 GTCCTGAAGCACAAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTG 685 Query 170827 TAGC 170830 | || Sbjct 686 TTGC 689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578974700098240