Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq3 508 7e-139 seq5 297 2e-75 seq6538 118 1e-21 >seq3 Length=64984695 Score = 508 bits (562), Expect = 7e-139 Identities = 730/1022 (71%), Gaps = 8/1022 (1%) Strand=Plus/Minus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 33666133 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 33666074 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 33666073 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 33666014 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| || |||||| |||| | ||||||| | || ||| |||||| | Sbjct 33666013 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 33665954 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 || || || || || || |||||| | | | | |||||| || || || || ||||| Sbjct 33665953 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 33665895 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||| || || || ||||| || ||| ||| | || || || ||| |||||| Sbjct 33665894 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 33665835 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || | |||||| || || || | || ||||| ||| | || ||||||||||||||||| Sbjct 33665834 TGCTCACCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 33665775 Query 163980 C-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 ||| || | | |||| || ||||| || || ||||||||||| |||||||| || | Sbjct 33665774 ATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 33665716 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || ||||||||| || || || || |||||||| |||||||||| || || ||||| Sbjct 33665715 TTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 33665656 Query 164099 GAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGA 164158 | || || || || || ||||| || | || | ||||| |||||||| ||||| |||| Sbjct 33665655 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 33665596 Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 |||| || |||||||||||||| |||||| |||| |||| || || ||| ||||||| Sbjct 33665595 ACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTC 33665536 Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278 | || | || || |||||||| || | ||||||||| || ||||| || || | Sbjct 33665535 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 33665476 Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 33665475 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 33665416 Query 164339 CGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 164398 | || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 33665415 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 33665356 Query 164399 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTC 164458 | || || | ||| |||||| || |||| | | || || ||| | || || | Sbjct 33665355 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTAC 33665296 Query 164459 GTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTT 164518 |||| || || || || || || || | ||||| |||||||| || || ||||||| Sbjct 33665295 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 33665236 Query 164519 TCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACC 164578 ||||||| || || || | || |||||||| | || || ||| | || | || | Sbjct 33665235 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATC 33665176 Query 164579 AGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTA 164636 ||| || || ||| || | ||||| || || || || || | || || || ||||| Sbjct 33665175 AGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 33665118 Query 164637 AT 164638 || Sbjct 33665117 AT 33665116 >seq5 Length=46902585 Score = 297 bits (328), Expect = 2e-75 Identities = 416/582 (71%), Gaps = 4/582 (1%) Strand=Plus/Plus Query 164059 CCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGA 164118 || || |||||||| |||||||||| || || |||||| || || || || || || Sbjct 22000794 CCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 22000853 Query 164119 TTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGA 164178 ||| || | || | ||||| |||||||| ||||| |||||||| || |||||||||||| Sbjct 22000854 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGA 22000913 Query 164179 GTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAAT 164238 || |||||| |||| |||| || || ||| ||||||||| || | || || |||||| Sbjct 22000914 GTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAAT 22000973 Query 164239 ACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAA 164298 || || | ||||||||| || ||||| || || || ||| | | || || | Sbjct 22000974 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 22001033 Query 164299 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCG 164358 ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || ||||| Sbjct 22001034 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCT 22001093 Query 164359 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 164418 ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| ||||| Sbjct 22001094 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 22001153 Query 164419 ACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGT 164478 | || |||| | | || || ||| | || || ||||| || || || || Sbjct 22001154 ATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCC 22001213 Query 164479 CAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTA 164538 || || || | ||||| |||||||| || || |||||||||||||| || || || | Sbjct 22001214 CAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTT 22001273 Query 164539 TTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGC--CAGGAGAACGGTTTG 164596 || |||||||| | || || ||| | || | || |||| || || ||| || Sbjct 22001274 TTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC--CTTA 22001331 Query 164597 TCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 | ||||| || || || || || | || || || ||||||| Sbjct 22001332 TATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 22001373 >seq6538 Length=695 Score = 118 bits (130), Expect = 1e-21 Identities = 213/309 (69%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 388 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 447 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| || || | || || ||| | || |||||||| || Sbjct 448 CTATTGCTCTTTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 507 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| || |||||| |||| | ||||||| | || ||| |||||| | Sbjct 508 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 567 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 || || || || || || |||||| | | | | |||| | || || || || ||||| Sbjct 568 ACCGCTGCAGTTTCTACTCCTGCTAAAAGTTTAGCGCATT-TTTTGTTGTTACTGTGGGG 626 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||| || || || || ||| || ||| ||| | || || || ||| |||||| Sbjct 627 TCCTGAAGCACAAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 686 Query 163920 GGCACTCCA 163928 || || || Sbjct 687 TGCTCTTCA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557354791157200