Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq3 596 2e-165 seq5 356 3e-93 seq6538 141 1e-28 seq24928 109 6e-19 >seq3 Length=64984695 Score = 596 bits (660), Expect = 2e-165 Identities = 735/1002 (73%), Gaps = 2/1002 (0%) Strand=Plus/Minus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| || ||||||||||| ||||||||||| || | || ||| Sbjct 33666121 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 33666062 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| | ||| | || |||||| | || || || | || || || ||| Sbjct 33666061 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 33666002 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 |||||||| || ||||| ||||||||| | || || || ||| | || || |||||| Sbjct 33666001 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 33665942 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 |||||| || || | | | |||||| | || | || ||||||||||| |||||| Sbjct 33665941 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 33665882 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || ||||| | ||||||||| | || || || ||||||||||| || | |||||| Sbjct 33665881 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACGGT 33665822 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853 |||||||| |||| ||||| ||| | ||||| |||||||| || || ||| || | | Sbjct 33665821 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 33665763 Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913 || || || ||||| || || ||||||||||| || |||||||||||| |||||||| Sbjct 33665762 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCT 33665703 Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973 || || || || |||||||| ||||||| || || || ||| || || | || || Sbjct 33665702 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 33665643 Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033 || |||||| | ||||| | ||||| || ||||| |||||| |||| ||||||||||| Sbjct 33665642 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 33665583 Query 169034 GATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 169093 |||||| || || ||| | |||| | || || | | || |||||||||| ||| || Sbjct 33665582 GATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGT 33665523 Query 169094 AGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCAC 169153 ||| |||||| | | | |||||||||| |||||||| ||| || ||| || || Sbjct 33665522 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 33665463 Query 169154 TCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213 ||| | || || || ||||||||||| || || ||||| || ||||| || |||||||| Sbjct 33665462 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 33665403 Query 169214 TATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 169273 |||| || ||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 33665402 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 33665343 Query 169274 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 169333 | | |||| ||| | | || | | ||||| ||| | ||||| ||||| |||||||| Sbjct 33665342 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 33665283 Query 169334 TGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAA 169393 |||||||| || ||| | ||||| |||||||| || |||||||| ||||| || || || Sbjct 33665282 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 33665223 Query 169394 CATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAA 169453 || || || ||||||||| |||| || ||| | || || ||||| |||||||| || Sbjct 33665222 TATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 33665163 Query 169454 CTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 | || | ||||||||||| || || || || || || || || Sbjct 33665162 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33665121 >seq5 Length=46902585 Score = 356 bits (394), Expect = 3e-93 Identities = 424/575 (74%), Gaps = 0/575 (0%) Strand=Plus/Plus Query 168921 CCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGA 168980 || || |||||||| ||||||| || || || ||| || || | || || || ||| Sbjct 22000794 CCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 22000853 Query 168981 TTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGT 169040 ||| | ||||| | ||||| || ||||| |||||| |||| ||||||||||||||||| Sbjct 22000854 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGA 22000913 Query 169041 GTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAAT 169100 || || ||| | |||| | || || | | ||| |||||||||| ||| ||||| ||| Sbjct 22000914 GTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAAT 22000973 Query 169101 ACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAA 169160 ||| | | | |||||||||| |||||||| ||| || ||| || ||||| | Sbjct 22000974 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 22001033 Query 169161 GAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCG 169220 || || || ||||||||||| || || ||||| || ||||| || |||||||| |||| Sbjct 22001034 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCT 22001093 Query 169221 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGG 169280 || ||||| | ||||| |||||||||||| | ||||| || || | ||| | ||| Sbjct 22001094 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 22001153 Query 169281 ACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCC 169340 | ||| | | || | | ||||| ||| | ||||| ||||| |||||||| |||||| Sbjct 22001154 ATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCC 22001213 Query 169341 CAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTC 169400 || || ||| | ||||| |||||||| || |||||||| ||||| || || || || || Sbjct 22001214 CAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTT 22001273 Query 169401 TTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTG 169460 || ||||||||| |||| || ||| | || || ||||| |||||||| ||| || | Sbjct 22001274 TTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATA 22001333 Query 169461 TTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||||||||||| || || || || || || || || Sbjct 22001334 TTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 22001368 >seq6538 Length=695 Score = 141 bits (156), Expect = 1e-28 Identities = 209/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| || ||||||||||| ||||||||||| || | || ||| Sbjct 400 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 459 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| || ||| | || |||||| | || || || | || || || ||| Sbjct 460 CCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 519 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 |||||||| || ||||| ||||||||| | || || || ||| | || || |||||| Sbjct 520 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 579 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 |||||| || | | | | |||| | | || | || ||||||||||| |||||| Sbjct 580 TCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 639 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCA 168790 ||||| ||| | ||||||||| | || || || ||||||||||| || || || Sbjct 640 GGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695 >seq24928 Length=265 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 22475 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAG 22534 |||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 27 TGGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTCAGGAGTTCGAC 86 Query 22535 TCTCCTATTCTCCAC 22549 ||||||| ||||||| Sbjct 87 TCTCCTAGTCTCCAC 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560377548066400