Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= NC_015289.1
Length=176184
Score E
Sequences producing significant alignments: (Bits) Value
seq3 585 3e-162
seq5 363 2e-95
seq6538 127 2e-24
>seq3
Length=64984695
Score = 585 bits (648), Expect = 3e-162
Identities = 724/988 (73%), Gaps = 2/988 (0%)
Strand=Plus/Minus
Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250
|| || ||||||||||| ||||||||||| || | || |||| ||| ||| | |||
Sbjct 33666103 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 33666044
Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310
| || |||||| |||| || || || || || || ||||||||||||||| | ||
Sbjct 33666043 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 33665984
Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370
|| ||| | || ||| || ||| | || || |||||||||||||| || || |
Sbjct 33665983 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 33665924
Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430
| | |||||| | | | || ||||||||||| || ||||| ||||| | |||
Sbjct 33665923 TTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 33665864
Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490
|| ||| | || || || ||||| |||||||||| |||||||||||| || |||| |||
Sbjct 33665863 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACGGTGCTTTCGCATTAATAGGT 33665804
Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAAT 166549
|| ||| | || || |||||| | ||||| ||| | | | || || || ||||||||
Sbjct 33665803 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAAT 33665745
Query 166550 CGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCA 166609
||| || |||||||| |||||||| || ||| ||||||||| || || || || |||||
Sbjct 33665744 CGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCA 33665685
Query 166610 ATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTT 166669
||| ||||||| || || || ||| || || | || || || |||||| |||| ||
Sbjct 33665684 ATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTT 33665625
Query 166670 CCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTAT 166729
| ||||| || || || |||||| |||||||||||||||||||||| || || ||| |
Sbjct 33665624 TTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGT 33665565
Query 166730 TCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCA 166789
|| || | || || | | || || ||||||| ||| ||||| || ||| | | | |
Sbjct 33665564 ACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 33665505
Query 166790 AGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTA 166849
||||||||| |||||||| ||| || || || | ||||||| |||||||| ||
Sbjct 33665504 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTA 33665445
Query 166850 TTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAA 166909
||||||||| || || ||||||| |||||| || ||||| || |||| ||| |||||
Sbjct 33665444 TTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAA 33665385
Query 166910 GAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCAT 166969
| ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | |
Sbjct 33665384 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCT 33665325
Query 166970 CGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAG 167029
|| | | ||||| ||| | ||||| ||||| |||||||| |||||||| ||| | |
Sbjct 33665324 TGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCG 33665265
Query 167030 GGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGG 167089
||||| || ||||| || ||||| || |||||||| || || ||||| || || || ||
Sbjct 33665264 TGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGG 33665205
Query 167090 TATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGA 167149
||| || |||||||||| || ||||| |||||||| | | |||||||||| ||
Sbjct 33665204 TATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 33665145
Query 167150 GGTTCTTCCTAGAGGTAACGCTCTCTAA 167177
|||||| || | || |||||||| |||
Sbjct 33665144 GGTTCTACCACGTGGAAACGCTCTTTAA 33665117
>seq5
Length=46902585
Score = 363 bits (402), Expect = 2e-95
Identities = 428/579 (74%), Gaps = 0/579 (0%)
Strand=Plus/Plus
Query 166599 CCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGA 166658
|| || |||||||| ||||||| || || || ||| || || | || || || |||
Sbjct 22000794 CCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 22000853
Query 166659 TTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGT 166718
||| |||| || | ||||| || || || |||||| ||||||||||||||||||||||
Sbjct 22000854 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGA 22000913
Query 166719 GTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAAC 166778
|| || ||| | || || | || || | | ||| || ||||||| ||| ||||| ||
Sbjct 22000914 GTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAAT 22000973
Query 166779 ACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAG 166838
||| | | | |||||||||| |||||||| ||| || || || | |||||||
Sbjct 22000974 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 22001033
Query 166839 GAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCG 166898
|||||||| ||||||||||| || || ||||||| |||||| || ||||| || ||||
Sbjct 22001034 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCT 22001093
Query 166899 TTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGG 166958
||| ||||| | ||||| |||||||||||| | ||||| || || | ||| | |||
Sbjct 22001094 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 22001153
Query 166959 ACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCC 167018
| ||| | | || | | ||||| ||| | ||||| ||||| |||||||| ||||||
Sbjct 22001154 ATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCC 22001213
Query 167019 CAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTC 167078
|| ||| | | ||||| || ||||| || ||||| || |||||||| || || |||||
Sbjct 22001214 CAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTT 22001273
Query 167079 TTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTA 167138
|| || || ||||| || |||||||||| || ||||| |||||||| | | ||
Sbjct 22001274 TTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATA 22001333
Query 167139 TTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177
|||||||| |||||||| || | || |||||||| |||
Sbjct 22001334 TTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 22001372
>seq6538
Length=695
Score = 127 bits (140), Expect = 2e-24
Identities = 195/278 (70%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250
|| || ||||||||||| ||||||||||| || | || |||| ||| || |||
Sbjct 418 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCAATTCCGCT 477
Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310
| || |||||| |||| || || || || || || ||||||||||||||| | ||
Sbjct 478 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 537
Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370
|| ||| | || ||| || ||| | || || |||||||||||||| || | |
Sbjct 538 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAAAGT 597
Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430
| | |||| | | | | || ||||||||||| || |||||||| ||| | |||
Sbjct 598 TTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGGGACTTCACTCGTTGG 657
Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCA 166468
|| ||| | || || || ||||| ||||||||||| ||
Sbjct 658 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563429093136640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |