Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 163 2e-34 seq4 143 2e-28 seq1 122 7e-22 seq11 107 2e-17 seq9 107 2e-17 seq8 105 5e-17 seq7 104 2e-16 seq3 104 2e-16 seq6 100 2e-15 >seq5 Length=46902585 Score = 163 bits (180), Expect = 2e-34 Identities = 445/679 (66%), Gaps = 2/679 (0%) Strand=Plus/Minus Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 || ||||| ||||| || ||||| || || | ||||| || |||| || |||||| Sbjct 7655077 CTGAGAACGGCTTGTGAGAGAGCGAAGAGAACGCTTTCCTCCACGGCTCAGACGACTATT 7655018 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 || ||||||| || ||||| |||||| | || | || || | || | ||| Sbjct 7655017 GAGATAGATTCTTTGCACGAGGGTGTTGATTTCTACGCGACGATATCCCGCGCGAGGTTT 7654958 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086 || || || |||||||| || ||| || || || || || ||||| | ||| Sbjct 7654957 GAGGAGATGAACATGGATCTCTTCAGGAAATGTATGGATCCTGTGGAGAAAGTTCTGAGA 7654898 Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||| |||| || | || || || | || || || || ||||| || || Sbjct 7654897 GATGCTAAGCTTGACAAGAGCCGTGTCCACGAGGTGGTCCTCGTGGGAGGATCCACGAGG 7654838 Query 552147 ATTCCTAAAATTC-GCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG 552205 ||||| || |||| || | | | ||| ||| ||||| || | | | |||| Sbjct 7654837 ATTCCGAAGATTCAGCAGCTTCTGCAAGACTTTTTT-AATGGAAAGGAGCTTTGTAAAAG 7654779 Query 552206 TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG 552265 |||| || ||||| |||||||| || || || || |||| || || |||||| |||| Sbjct 7654778 CATTAACCCTGATGAAGCTGTTGCTTACGGAGCTGCCGTTCAGGCCGCGATTCTTACTGG 7654719 Query 552266 ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGG 552325 || || || | ||| || || | ||| | || || | || || ||||| Sbjct 7654718 TGAAGGAAGCGACAAGGTGCAAGATCTTCTGCTTCTTGACGTGGCGCCGCTGAGCCTTGG 7654659 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | || || | ||| || | |||||| |||||| || || || || ||||||| Sbjct 7654658 CATCGAGACGGCTGGTGGAGTGATGACTGTGCTTATCCCGAGGAACACGACGGTTCCTTG 7654599 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 ||| || | || || || || ||| | || ||||| ||| |||| || ||| | Sbjct 7654598 TAAGAAGGAGCAAGTGTTCTCCACCTATGCGGACAATCAGCCTGGTGTTCTGATCCAAGT 7654539 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 | ||||||||| | || ||||| || || | ||||| || ||| | | | Sbjct 7654538 CTATGAAGGAGAGCGTGCGAGGACCAAAGACAACAACCTTCTTGGCACCTTTGAGCTTAA 7654479 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| ||||||||||| || |||||||| || ||||| | ||| ||||| || || || Sbjct 7654478 AGGCATTCCTCCTGCGCCACGTGGAGTTCCTCAAATCAATGTTTGCTTCGACATTGACGC 7654419 Query 552566 CAATGGAATTTTGAATGTG 552584 |||||| || ||||| ||| Sbjct 7654418 CAATGGGATCTTGAACGTG 7654400 Score = 89.7 bits (98), Expect = 4e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||||||||| ||||| || || || || |||||||| || ||||| || Sbjct 33724822 ATGTTGTAATCAGCTAGGGTTCTCCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTC 33724763 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 |||||||| |||||||| || || || |||||||| || ||| || || || || Sbjct 33724762 TGCTGATCCGGAGGAATACCCTCCTTGTCTTGAATCTTGGCTTTAACATTGTCGATCGTG 33724703 Query 563413 TCAGTG-TGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 |||| | | || || || || | || || || || || || |||||||| || || Sbjct 33724702 TCAGAGCTTTCCAC-CTCAAGGGTGATCGTCTTTCCCGTGAGTGTCTTAACGAAGATCTG 33724644 Query 563472 CAT 563474 ||| Sbjct 33724643 CAT 33724641 >seq4 Length=53719093 Score = 143 bits (158), Expect = 2e-28 Identities = 548/850 (64%), Gaps = 18/850 (2%) Strand=Plus/Plus Query 551743 CTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATC 551802 ||||||| | | ||||| ||| ||||| || |||||| |||||| |||||| Sbjct 19019186 CTCTTCTCACCATTGAAGAAGGTATCTTTGAGGTCAAAGCTACCGCTGGAGACACTCATC 19019245 Query 551803 TTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAAACG 551860 ||||||||||||||||||| || ||| |||| | ||| | |||| |||| ||||| | Sbjct 19019246 TTGGTGGCGAAGATTTTGACAACAGAATGGTTAACCAT--TTTGTTCAAGAGTTTAAGAG 19019303 Query 551861 AAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCT 551918 || | ||| || || | | | ||| |||| | | | | || || || Sbjct 19019304 GAAGAGCAAGAAGGACATTAGTGGTAACC--CCAGAGCTTTGAGGAGGTTGAGGACGGCC 19019361 Query 551919 TGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCA 551978 || || ||||| || | |||| || || | |||||||| ||||| | ||||| Sbjct 19019362 TGTGAGAGAGCTAAGAGGACTCTCTCTTCCACCGCGCAAACCACCATTGAGATTGATTCT 19019421 Query 551979 TTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGT 552038 | ||||||||| |||| | || | || | | | || | |||||||| | Sbjct 19019422 CTCTTTGAGGGAGTTGACTTCTATTCTGCTCTCACCCGTGCTAGGTTTGAAGAACTCAAC 19019481 Query 552039 TCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAGATTCAAAGAT 552097 ||||| || || || || || || || || |||| | | | ||| | ||||| Sbjct 19019482 ATGGATCTTTTCAGGAAGTGTATGGAGCCTGTC-AAGAAGTGTCTCCGTGATGCTAAGAT 19019540 Query 552098 TGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAAT 552157 || || || ||| ||||| |||| ||||||||||| |||||| | || || ||| | Sbjct 19019541 GGACAAGAGCACAGTTCATGATGTTGTCCTTGTTGGTGGTTCTACACGTATCCCCAAAGT 19019600 Query 552158 TCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGT--GTTAATC 552213 || | | | ||| || |||||||||||| | | || |||| |||| | Sbjct 19019601 TCAATAGCTTCTCCAAG--ATTTCTTCAATGGTAAAGAGCT--CTGCAAGTCCATTAACC 19019656 Query 552214 CAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTG 552273 | || |||||||| || |||||||| | |||| | |||||||| || || Sbjct 19019657 CTGACGAGGCTGTGGCTTATGGTGCTGTGGTTCAGGGTGCTATTCTAAGCGGTGAAGGGA 19019716 Query 552274 ATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAA 552333 |||| | | ||| | || | || | || || |||||||| ||||||||| | |||| Sbjct 19019717 ATGAGATGGTGCAAGACCTTCTTCTCTTGGACGTGACTCCTCTTTCTCTTGGTCTTGAAA 19019776 Query 552334 CAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAAT 552393 ||| || || | ||||| | | ||| | ||||| ||||| || || || || Sbjct 19019777 CAGCCGGTGGAGTCATGACCACCTTGATCCAGAGAAACACTACAATCCCAACGAAGAAGG 19019836 Query 552394 CTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAG 552453 | || || ||||| || ||||| || || ||| ||| || ||| | | || | Sbjct 19019837 AACAAGTCTTCTCTACTTACTCAGACAACCAGCCTGGTGTGTTGATCCAAGTGTACGAGG 19019896 Query 552454 GAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTC 552513 | || ||| || || || || || | || || | || | | ||||| | Sbjct 19019897 GTGAGAGAGCTAGGACCAAGGACAACAACCTCCTCGGAAAGTTCGAGCTCTCTGGTATCC 19019956 Query 552514 CTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAA 552573 |||| ||||| ||||| || ||||| || ||| |||||| || ||||| || || | Sbjct 19019957 CTCCGGCTCCACGTGGTGTCCCGCAGATCACAGTGTGTTTCGACATTGATGCAAACGGTA 19020016 Query 552574 TTTTGAATGT 552583 | | ||||| Sbjct 19020017 TCCTTAATGT 19020026 Score = 102 bits (112), Expect = 7e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || || || || ||| ||||| ||||||||| ||||| || || | Sbjct 7247653 GAGACGAAGCACGAGGTGGAGCGTAGACTCTTTCTGAATATTGTAGTCAGCGAGCGTGCG 7247712 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| || || ||||| || || || || ||||| || |||||||| ||||| Sbjct 7247713 CCCATCCTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCTTC 7247772 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAG 563434 || || || || || || || ||||| || || | | | || | |||||| Sbjct 7247773 CTTGTCCTGGATCTTAGCCTTGACGTTGTCAATAGTGTCGGAGCTCTCGACCT-CGAGAG 7247831 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || || || || |||||||| |||||||||||||| Sbjct 7247832 TAATGGTCTTGCCGGTTAGAGTTTTCACGAAAATTTGCAT 7247871 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 || |||||||| ||| ||||| || |||||||| || || ||||| ||||||| Sbjct 8022640 ACGAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCCAGGGTTCTGCCATCTTCA 8022699 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 || || || ||||| || || || ||||||||||| || ||||| |||||||| || || Sbjct 8022700 AGCTGCTTACCGGCGAAGATGAGCCTTTGCTGATCTGGTGGAATACCTTCTTTGTCCTG 8022758 >seq1 Length=43764888 Score = 122 bits (134), Expect = 7e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | || || || ||||| || || || ||||||||||| || | |||| Sbjct 11597157 AAGTAACCAAGGCTGTTATCACTGTGCCTGCTTACTTTAATGACTCGCAGAGGACGGCTA 11597216 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 ||||||||||||| || |||||||| ||| |||||||||||||||||||||| || |||| Sbjct 11597217 CTAAAGATGCTGGTCGCATTGCTGGGCTTGATGTTCTTCGTATTATCAATGAGCCCACTG 11597276 Query 550509 CTGCTGCACTTGCATATGGACTTGA 550533 ||||| | | || ||||| |||| Sbjct 11597277 CTGCTTCTTTGGCTTATGGTTTTGA 11597301 Score = 111 bits (122), Expect = 1e-18 Identities = 104/130 (80%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 550385 CAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA-ACGTCA 550443 ||| |||| || | || || || ||||| || || || |||||||||||||| | | | Sbjct 11608860 CAAAAAGTGACCAAGGCTGTCATCACTGTGCCTGCTTACTTTAATGACTCACAGATGAC- 11608918 Query 550444 AGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 ||||| |||||||||||| || || || || ||| |||||||||| ||||||||||| || Sbjct 11608919 AGCTATTAAAGATGCTGGTCGCATCGCAGGGCTTGATGTTCTTCGAATTATCAATGAGCC 11608978 Query 550504 TACTGCTGCT 550513 ||||||||| Sbjct 11608979 CACTGCTGCT 11608988 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550386 AAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 || |||| || | || || || || || || || || || || ||||| || | || Sbjct 11603961 AAAAAGTAACCAAGGCTGTCATCACGGTGCCTGCTTACTTCAACGACTCGCAGAGGACAG 11604020 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 ||||||||||||| || || |||||||| | |||||||||||||||||||||| || | Sbjct 11604021 CTACTAAAGATGCGGGTCGCATTGCTGGTTTGGATGTTCTTCGTATTATCAATGAGCCCA 11604080 Query 550506 CTGCTGCTGCACTTGCATATGGACTTGA 550533 |||||||| | | || ||||| |||| Sbjct 11604081 CTGCTGCTTCCTTGGCTTATGGTTTTGA 11604108 >seq11 Length=360705 Score = 107 bits (118), Expect = 2e-17 Identities = 432/671 (64%), Gaps = 12/671 (2%) Strand=Plus/Plus Query 551910 AGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAA 551969 || || ||||| || ||||| || | |||| || || |||||||||| || || Sbjct 250360 AGGACAGCTTGTGAGAGAGCGAAGAGGACTCTCTCTTCCACCGCTCAAACCACCATCGAG 250419 Query 551970 GTAGATTCATTATTTGAGGGAATTGATTA-TAATACGCCTATTTCGAGGGCCAAATTTGA 552028 | || || ||||| |||||||||||| || | ||| | | | || | || || Sbjct 250420 ATTGACTCTCTATTTAAGGGAATTGATTTCTACTCTGCCC-TCACCCGTGCTAGGTTCGA 250478 Query 552029 AGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAG 552087 || | ||||| ||||| || || || || || || |||| | | | | Sbjct 250479 GGAGCTCAACATGGATCTTTTTAGGAAGTGTATGGAGCCGGTTGAG-AAGTGTCTGCGTG 250537 Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147 || | ||||| || || || || ||||| |||| ||||| ||||| |||||| | | Sbjct 250538 ATGCTAAGATGGACAAGAGCACTGTCCATGATGTTGTCCTTGTCGGTGGTTCTACACGTA 250597 Query 552148 TTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG 552205 | |||||| ||| | | | ||| | | ||||| |||||| | | || ||| Sbjct 250598 TCCCTAAAGTTCAGCAGCTTCTCCAAGATTTC--TTCAACGGTAAAGAGCTC--TGCAAG 250653 Query 552206 TGT--TAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCT 552263 | | ||| ||||| |||| ||| || |||||||| || |||| | |||||||| Sbjct 250654 TCTATTAACCCAGACGAGGATGTGGCTTATGGTGCAGCGGTTCAGGGTGCTATTCTGAGC 250713 Query 552264 GGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 || || |||| || | ||| | || | ||| | |||||||||||||| ||||| Sbjct 250714 GGTGAAGGGAATGAGAAGGTGCAAGACCTTCTTCTTTTGGATGTTACTCCTCTTTCTCTC 250773 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 ||| | || || | || || | ||||| | | ||| | || || || ||||| || Sbjct 250774 GGTCTTGAGACTGCCGGTGGAGTCATGACCACCTTGATCCAGAGGAACACAACTATCCCA 250833 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 ||||||| | || || || || || || || || || ||| ||| || ||| Sbjct 250834 ACTAAAAAAGAGCAGGTGTTCTCCACTTACTCTGACAACCAGCCTGGTGTGTTGATCCAA 250893 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503 | | || || || ||| || || || || || | || || | ||| | | Sbjct 250894 GTCTACGAGGGTGAGAGAGCTAGGACCAAGGACAACAACCTCCTCGGAAAGTTTGAGCTC 250953 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 || |||||||||||||| ||||| || || || ||| || |||||||| ||| Sbjct 250954 TCTGGCATTCCTCCTGCTCCACGTGGTGTCCCTCAGATTACTGTCTGCTTCGATATTGAT 251013 Query 552564 GCCAATGGAAT 552574 || || || || Sbjct 251014 GCAAACGGTAT 251024 >seq9 Length=54679868 Score = 107 bits (118), Expect = 2e-17 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || ||||| ||||| ||||| ||| ||||||||| || || ||||| || || || || Sbjct 53991228 ATGTTGTAGTCAGCGAGAGTCCTTCCATCTTCAAGCTGCTTACCGGCGAAGATGAGCCTC 53991169 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| || |||||||| ||||| || || || || || || || ||||| || Sbjct 53991168 TGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTG 53991109 Query 563413 TCAGTG-TGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 |||| | | || | ||||||||| || || || || |||||||| ||||||||||| Sbjct 53991108 TCAGAGCTCTCGACCT-CGAGAGTAATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTG 53991050 Query 563472 CAT 563474 ||| Sbjct 53991049 CAT 53991047 Score = 104 bits (114), Expect = 2e-16 Identities = 424/649 (65%), Gaps = 22/649 (3%) Strand=Plus/Plus Query 551745 CTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTT 551804 ||||| || | || || ||| ||||| || || ||| ||||||| |||||||| Sbjct 54269645 CTTCTCACTATTGAGGAAGGTATCTTTGAGGTTAAGGCGACTGCTGGAGATACTCATCTT 54269704 Query 551805 GGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAAACGAA 551862 ||||| || || || || || ||| |||| | || | |||| | || ||||| | | Sbjct 54269705 GGTGGTGAGGACTTCGACAACAGAATGGTGAACCAC--TTTGTTCAGGAGTTTAAGAGGA 54269762 Query 551863 AAAACAA--AGTTGATCTATCTACATCTGCCAA-AGCTCTTCGTCGTCTAAGAACTGCTT 551919 | | ||| || || || | | | |||| ||||||| | | | || || || | Sbjct 54269763 AGAGCAAGAAGGACAT-TACCGGAAAC--CCAAGAGCTCTTAGGAGGTTGAGGACGGCCT 54269819 Query 551920 GCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCAT 551979 | || ||||| || | ||||||| || | |||||||||| || || | || || Sbjct 54269820 GTGAGAGAGCAAAGAGGACTCTTTCCTCCACTGCTCAAACCACCATCGAGATTGACTCTC 54269879 Query 551980 TATTTGAGGGAATTGA-TTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGT 552038 | |||||||| ||||| || || | || | | | || | ||| || || | Sbjct 54269880 TCTTTGAGGGTATTGACTTCTACTCTGCAC-TCACCCGTGCTAGATTCGAGGAGCTCAAC 54269938 Query 552039 TCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT-TTTAAGAGATTCAAAGAT 552097 ||||||||||| || || || ||||| | | |||| | | | ||| | ||||| Sbjct 54269939 ATGGATCTCTTTAGGAAGTGTATGGAGCCAGT-GGAGAAGTGTCTCCGTGATGCTAAGAT 54269997 Query 552098 TGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAAT 552157 || || || || || || |||| ||||| ||||| || || | ||||| || | Sbjct 54269998 GGACAAGAGCACCGTCCACGATGTTGTCCTTGTCGGTGGCTCCACCCGTATTCCCAAGGT 54270057 Query 552158 TCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG--TGTTAATCC 552214 || || || || || ||| ||||| || ||| | | || ||| | | || || Sbjct 54270058 TCAGCAATTGCTTCAGGACTT-CTTCAACGGCAAAGAGCT--TTGCAAGTCTATCAACCC 54270114 Query 552215 AGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGA 552274 || ||||| ||||| || ||||| || | || | ||||||||| ||| || | Sbjct 54270115 CGACGAGGCCGTTGCTTACGGTGCTGCCGTCCAGGGAGCTATTCTCAGTGGTGAAGGAAA 54270174 Query 552275 TGAAAAACTACAAAATATTGTACTTG-TAGATGTTACTCCTCTATCTCTTGGTTTAGAAA 552333 || || | ||| || || | |||| | ||||| |||||||| || || ||| | || | Sbjct 54270175 CGAGAAGGTCCAAGATCTTCT-CTTGCTCGATGTCACTCCTCTCTCACTCGGTCTTGAGA 54270233 Query 552334 CAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 ||| || ||| | ||||| | | | |||| ||||| || || ||||| Sbjct 54270234 CAGCCGGTGGTGTCATGACCACTTTGATCGCAAGAAACACAACCATTCC 54270282 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| | ||| || ||||||||||| ||| | ||| || ||||||||||| ||||| Sbjct 23042670 GAGCCTGAGGACGAGATGAAGGGTCGACTCCTTCTGG--ATGTTGTAATCAGCGAGAGTA 23042727 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | ||| || ||||| || ||||| || ||||| ||||||||||| || || ||||| Sbjct 23042728 CGTCCATCCTCGAGTTGCTTCCCGGCGAAGATAAGCCTTTGCTGATCCGGTGGGATTCCC 23042787 Query 563374 TCTTTATCTTGAATTTT 563390 || || || || || || Sbjct 23042788 TCCTTGTCCTGGATCTT 23042804 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | ||||| || || || || || ||||| || ||||| ||||||||||| ||| Sbjct 54269438 GCAGTCGTCACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACTAAAGACGCT 54269497 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||| || | || ||| | ||||| ||||| || || || |||||||| || Sbjct 54269498 GGTGTGATTGCCGGTTTGAACGTTATGCGTATCATCAACGAGCCCACCGCTGCTGCTATT 54269557 Query 550520 GCATATGGACTTGATAA 550536 || || || ||||| || Sbjct 54269558 GCCTACGGTCTTGACAA 54269574 >seq8 Length=41758685 Score = 105 bits (116), Expect = 5e-17 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 550387 AGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 ||||| |||| | || || | ||||| || || || ||||||||||| || | || Sbjct 16434642 AGAAGGTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGACTCTCAGAGGACAG 16434701 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 |||| ||||||||||| ||||||||||| | | |||||||||||||||||||| || | Sbjct 16434702 CTACGAAAGATGCTGGTCGTATTGCTGGGTTGGAGGTTCTTCGTATTATCAATGAGCCCA 16434761 Query 550506 CTGCTGCTGCACTTGCATATGGACTTGA 550533 | |||||| | | || ||||| |||| Sbjct 16434762 CGGCTGCTTCGTTGGCTTATGGGTTTGA 16434789 Score = 87.8 bits (96), Expect = 1e-11 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| || ||| ||||||| |||||| ||||||||||| | || || | ||| Sbjct 39686515 ATAGGGATCGATCTAGGAACTACATATTCATGTGTTGGTGTGTACCATAACAACCACGTT 39686574 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| || || || ||||| || ||||||| || ||||| | ||| | || || || Sbjct 39686575 GAAATCATAGCAAACGATCAGGGAAACAGAATCACACCATCATGGGTTGCCTTTACCGAT 39686634 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || |||| | | | || || || || || ||||||| | |||||| || Sbjct 39686635 ACCGAACGTCTCATAGGCGAGGCTGCTAAGAATCAAGCGGCCAAGAATCCTGAAGGGACC 39686694 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAA 550205 || |||||| | |||||| | || ||||||| Sbjct 39686695 ATCTTTGATCCAAAACGTCTGATGGGAAGAA 39686725 >seq7 Length=48366697 Score = 104 bits (114), Expect = 2e-16 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || ||||||||||| || | |||||||||||||||||| || ||| Sbjct 43344208 ACGGTGCCTGCTTACTTTAATGACTCGCAGAGGACAGCTACTAAAGATGCTGGTCGCATT 43344267 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | | ||||||||||||||||||||||| || |||||| | | || ||||| Sbjct 43344268 GCTGGTTTGGAAGTTCTTCGTATTATCAATGAACCCACGGCTGCTTCTTTGGCTTATGGT 43344327 Query 550529 CTTGA 550533 |||| Sbjct 43344328 TTTGA 43344332 Score = 93.3 bits (102), Expect = 3e-13 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || ||||| || ||| |||||||||| | || ||| | ||| Sbjct 12882305 ATAGGGATAGATCTTGGTACCACCTACTCTTGCGTTGGTGTTTACAAGAACGGTCATGTT 12882246 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| ||||||||||| ||||| ||| | | |||||| || | ||| ||||||| || Sbjct 12882245 GAAATCATTGCCAATGACCAAGGCAACCGTATTACTCCTTCCTGGGTTGCTTTCACCGAC 12882186 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCT 550165 | || | ||||||| || || || | ||||| || ||||||| Sbjct 12882185 TCCGAGAGGCTCATTGGTGAGGCTGCTAAGAACCAAGCTCCTCTTAATCCT 12882135 >seq3 Length=64984695 Score = 104 bits (114), Expect = 2e-16 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || || || || |||||||||||||| | |||||| | ||| Sbjct 9390054 ATAGGGATAGATCTTGGTACTACCTACTCTTGTGTTGGTGTTTACAAGAATGGTCATGTT 9389995 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || ||||||||||| ||||| ||| | | ||||| || | ||| |||||| || Sbjct 9389994 GAGATCATTGCCAATGACCAAGGAAACCGTATCACTCCTTCGTGGGTTGGTTTCACTGAC 9389935 Query 550115 ACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 | ||| | ||| ||||||| || || || |||| || ||| ||||||| | || Sbjct 9389934 AATGAGAGGCTTA-TTGGTGAGGCTGCTAAGAATCAGGCGGCTGTTAATCCTGAGAGGAC 9389876 Query 550174 TATTTTTGATG 550184 | ||||||||| Sbjct 9389875 TGTTTTTGATG 9389865 Score = 86.0 bits (94), Expect = 5e-11 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT-AT 550467 || || ||||| || || || ||||| || ||||||||||| || || ||||| ||| || Sbjct 33422797 ACGGTTCCAGCCTACTTCAACGACTCTCAGCGTCAAGCTACAAAGGACGCTGG-CGTCAT 33422855 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| || || || | ||||| ||||| || || || || ||||| |||| ||||| Sbjct 33422856 CGCTGGTCTGAACGTCATGCGTATCATCAACGAGCCGACCGCAGCTGCCATTGCTTATGG 33422915 Query 550528 ACTTGATAA 550536 ||||| || Sbjct 33422916 TCTTGACAA 33422924 >seq6 Length=39822476 Score = 100 bits (110), Expect = 2e-15 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || ||||| || ||||||||| |||| | |||||| | ||| Sbjct 18077242 ATAGGGATAGATCTTGGTACCACCTACTCTTGTGTTGGGGTTTACAAGAATGGTCATGTT 18077183 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| ||||||||||| ||||| ||| | | |||||| || | ||| ||||||| || Sbjct 18077182 GAAATCATTGCCAATGACCAAGGCAACCGTATTACTCCTTCATGGGTTGCTTTCACCGAC 18077123 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCC 550164 | ||| | ||||||| || || || | || || ||| |||||| Sbjct 18077122 TCCGAAAGGCTCATTGGTGAGGCTGCTAAGAACCAGGCTGCTGTTAATCC 18077073 Score = 91.5 bits (100), Expect = 1e-12 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 550444 AGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||| |||||||| || |||||||| ||| |||||||||||||||||||||| || Sbjct 5856562 AGCTACTATAGATGCTGATCGCATTGCTGGGCTTGATGTTCTTCGTATTATCAATGAGCC 5856503 Query 550504 TACTGCTGCT 550513 ||||||| || Sbjct 5856502 TACTGCTACT 5856493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027556840004140