Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 120 2e-22 seq4 107 1e-18 seq5 98.7 8e-16 seq6 91.5 1e-13 seq9 87.8 1e-12 >seq3 Length=64984695 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || || |||| || ||||| ||||| || || ||||| |||| | Sbjct 34861155 CCTCCACGTAGACGTAAGACCAGGTGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGCT 34861214 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGG 48658 ||| | | | || ||||||||||| |||||||| |||| | ||| || ||| ||||| Sbjct 34861215 AGAGTCCTTCCATCCTCCAACTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 34861274 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | ||||||||||| ||||| ||| || | | || ||||| |||||| Sbjct 34861275 ATC-CCCTCCTTGTCTTGGATCTTGGCTTTCACGTTGTCAATAGTGTCTGAGCTCTCCAC 34861333 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| |||||||| || |||||||| || || |||||||| ||||| Sbjct 34861334 CTCCAAAGTAATCGTCTTCCCCGTCAAGGTCTTGACAAAAATTTGCAT 34861381 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| ||||| ||||| || ||||| ||| || || ||||||||||||| Sbjct 34861610 GCCTCCGCGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTCTGGATATTGTAATCAGC 34861669 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | | |||| ||||||||||| ||||| || || || | ||| ||||||| || Sbjct 34861670 CAAGGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGG 34861729 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||| || ||||| ||| || | | | || || |||||| Sbjct 34861730 GATTCCCTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCCAC 34861789 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| ||||| || || || ||||||||||| Sbjct 34861790 CTCCAAAGTGATAGTCTTTCCGGTCAACGTCTTGACGAAAATCTGCAT 34861837 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| ||||||||||| || || || ||| || || || ||||| |||| Sbjct 59730413 GCCTCCACGTAGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGC 59730354 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || ||||||||||| ||||| || |||| | ||| ||||| | ||| Sbjct 59730353 GAGAGTACGTCCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGATCGGGGGG 59730294 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| ||||| || ||||| ||| || | | | || || |||||| Sbjct 59730293 GATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCCGAGCTCTCCAC 59730234 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || ||||| || | ||| || || || ||||||||| Sbjct 59730233 CTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 59730185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||| | | | ||| | || || | |||||| || ||||| Sbjct 34860734 CTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAA 34860793 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||||| || | ||| |||||||| |||||| || ||| Sbjct 34860794 GATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATT 34860853 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | ||||| ||||||||| | ||| ||||| || || ||||| || || || Sbjct 34860854 GTCAATGGTGTCTGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAAC 34860913 Query 48755 AAAAATCTGCATC 48767 |||||||||||| Sbjct 34860914 GAAAATCTGCATC 34860926 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| || || ||||| |||| ||| | | | || ||||||||||| |||||||| Sbjct 34861419 TCTTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAACTGCTTGCCGGCAAAG 34861478 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | ||| || |||| || | |||||||| || ||||| || ||| | Sbjct 34861479 ATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTA 34861538 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||||||||||| || || || ||||| ||||| || || || Sbjct 34861539 TCAATAGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGACG 34861598 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 34861599 AAGATCTGCAT 34861609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || ||||| ||| || || || ||||| |||| | ||| |||| ||| Sbjct 11141807 ACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTCCCGTCTTCC 11141866 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || ||||| || || | ||| ||||||| |||| ||| |||||||| Sbjct 11141867 AACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 11141926 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| || | | | || || |||||||| | || || || || Sbjct 11141927 ATCTTTGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTC 11141986 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | |||||| || || ||||||||| Sbjct 11141987 CCGGTGAGAGTTTTCACGAAGATCTGCATC 11142016 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || ||||| ||||| || | || | ||| Sbjct 59730859 AGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGA 59730800 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || || || ||||| || |||| || | || ||| Sbjct 59730799 CCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCC 59730740 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | | || || ||||||||||| || Sbjct 59730739 TTGTCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCCGAACTCTCCACCTCCAGTGTG 59730680 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || || || || ||||| |||||||| Sbjct 59730679 ATGGTCTTTCCGGTTAAGGTCTTGACAAAGATCTGCAT 59730642 >seq4 Length=53719093 Score = 107 bits (118), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| |||||||| ||||| || | | ||| Sbjct 28156510 AGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCCGCCAATGTTCTG 28156451 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || |||| | ||| || |||| |||| |||||| Sbjct 28156450 CCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCC 28156391 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGA-CGCCTCCACCTCCACCGT 48727 ||||| |||||| ||| || | | || || || | | ||||||||| || Sbjct 28156390 TTGTCTTGGATCTTTGCTTTGACGTTGTCAATAGTATCGGAGCTCTCCCACCTCCAATGT 28156331 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| |||||||| ||||| || || ||||| |||||||| Sbjct 28156330 AATAGTTTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 28156292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| |||||| ||||||||||| |||| || | || | || || | |||| Sbjct 7247669 TGGAGCGTAGACTCTTTCTGAATATTGTAGTCAGCGAGCGTGCGCCCATCCTCAAGCTGC 7247728 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 |||||||| || || || | ||| || |||| |||| ||| |||||||| ||||| Sbjct 7247729 TTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTA 7247788 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | || || || ||| ||||| | ||||| || || || || Sbjct 7247789 GCCTTGACGTTGTCAATAGTGTCGGAGCTCTCGACCTCGAGAGTAATGGTCTTGCCGGTT 7247848 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | |||||| || ||||| |||||| Sbjct 7247849 AGAGTTTTCACGAAAATTTGCATC 7247872 >seq5 Length=46902585 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||||| | || | |||||| || ||| || || || |||||||||| Sbjct 33724868 GCCACCACGTAGCCTGAGGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 33724809 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| ||| |||| || | |||||| ||||| || || || | ||| ||||||| || Sbjct 33724808 TAGGGTTCTCCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 33724749 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| |||||| ||| ||| | | | || || ||||| Sbjct 33724748 AATACCCTCCTTGTCTTGAATCTTGGCTTTAACATTGTCGATCGTGTCAGAGCTTTCCAC 33724689 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || ||||| |||||||| | || || || || ||||||||| Sbjct 33724688 CTCAAGGGTGATCGTCTTTCCCGTGAGTGTCTTAACGAAGATCTGCATC 33724640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || ||||| | ||| || || ||| || ||||| |||||||| | | | ||| Sbjct 33725086 AGACGTAACACGAGATGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAATGTACGA 33725027 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| |||| ||||| || || | || | |||||| Sbjct 33725026 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCAGGCGGGATTCCCTCC 33724967 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | | || || ||||||||| | || Sbjct 33724966 TTGTCTTGTATCTTGGCCTTGACGTTATCGATGGTGTCGGAGCTCTCCACCTCGAGTGTG 33724907 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||||||||| || || || ||||| |||||||| Sbjct 33724906 ATCGTTTTTCCCGTTAAGGTCTTGACAAAGATCTGCAT 33724869 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | |||| || ||||| ||| || || || |||||||| | Sbjct 12956449 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 12956390 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGG 48658 || | | |||| |||| |||||| ||||| || ||||||||||| |||||| ||||| Sbjct 12956389 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGATCCGGTGGG 12956330 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | || |||||||| ||||| || ||| | | | || || | || || Sbjct 12956329 ATC-CCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCGAC 12956271 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || ||||| || ||||| | ||||| ||||| |||||||| Sbjct 12956270 CTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 12956223 >seq6 Length=39822476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || |||||||| || || || |||||| || || ||||| |||| | | ||| Sbjct 26071114 AGACGTAACACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAAGGTGCGA 26071055 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||| || || || ||||| ||||| || |||| |||| ||||| Sbjct 26071054 CCATCCTCGAGTTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCT 26070995 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || || | | || ||||| ||||||||||| || Sbjct 26070994 TTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTATCTGAACTCTCCACCTCCAAAGTG 26070935 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || |||||||||||||| Sbjct 26070934 ATTGTCTTCCCGGTCAATGTCTTAACAAAAATCTGCAT 26070897 >seq9 Length=54679868 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || |||||| ||||| ||||| |||| | | ||| Sbjct 23042443 AGACGCAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTACGA 23042502 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || |||| ||||| || || | |||| |||||| Sbjct 23042503 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCGGGAGGAATACCCTCC 23042562 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | | || || ||||||||| | || Sbjct 23042563 TTGTCTTGGATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGTGTG 23042622 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | ||| || || || |||||||| Sbjct 23042623 ATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 23042660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380784920924178