Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq3 497 1e-135 seq5 316 2e-81 seq4 150 2e-31 seq9 132 5e-26 seq6538 96.9 4e-15 >seq3 Length=64984695 Score = 497 bits (550), Expect = 1e-135 Identities = 716/1007 (71%), Gaps = 2/1007 (0%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || ||||| |||||||| || |||||||| || | || || Sbjct 33666121 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 33666062 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 33666061 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 33666002 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || || ||||| | ||| ||||||| | |||||| || ||| | || || || || Sbjct 33666001 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 33665942 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || |||||| || | | | |||||| | | |||| ||||||||||| | || Sbjct 33665941 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 33665882 Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918 || |||| || ||||| ||| | || || || ||| ||| || |||| ||||||| Sbjct 33665881 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACGGT 33665822 Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTAT 164977 || ||||| |||| ||||| ||| | || || ||||| || || || ||| | | | Sbjct 33665821 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 33665763 Query 164978 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037 || ||||| ||||| || || ||||||||||| |||||||||||||| ||||| || Sbjct 33665762 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCT 33665703 Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097 || || ||||| ||||| || ||||||| || || || ||||| || || || || Sbjct 33665702 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 33665643 Query 165098 CTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATAT 165157 ||| ||||| | | || | ||||| || || || ||||| | ||||| || ||||| Sbjct 33665642 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 33665583 Query 165158 GATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGT 165217 |||||| || || ||| | |||| | || || ||| ||||||||||| | || || Sbjct 33665582 GATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGT 33665523 Query 165218 TGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGAC 165277 |||||||| |||| || ||||| || |||||||| || || ||| | | || Sbjct 33665522 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 33665463 Query 165278 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || Sbjct 33665462 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 33665403 Query 165338 CATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 165397 |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | || Sbjct 33665402 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 33665343 Query 165398 TCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 | | |||| || |||| | | ||||| ||| | ||||| ||||| || || || Sbjct 33665342 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 33665283 Query 165458 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 165517 ||| ||||| ||| | ||||| |||||||| ||||||||||| ||||| || ||||| Sbjct 33665282 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 33665223 Query 165518 CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAA 165577 || || || || ||||| | || |||||| |||| || ||||| || |||||||| Sbjct 33665222 TATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 33665163 Query 165578 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 33665162 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33665116 >seq5 Length=46902585 Score = 316 bits (350), Expect = 2e-81 Identities = 418/580 (72%), Gaps = 0/580 (0%) Strand=Plus/Plus Query 165045 CCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGA 165104 ||||| ||||| || ||||||| || || || ||||| || || || || ||| || Sbjct 22000794 CCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 22000853 Query 165105 TTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGT 165164 ||| | | || | ||||| || || || ||||| | ||||| || ||||||||||| Sbjct 22000854 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGA 22000913 Query 165165 GTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAAT 165224 || || ||| | |||| | || || ||| |||||||||||| | || || |||||| Sbjct 22000914 GTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAAT 22000973 Query 165225 ACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAA 165284 || |||| || ||||| || |||||||| || || ||| | | || || | Sbjct 22000974 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 22001033 Query 165285 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCG 165344 ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || |||| Sbjct 22001034 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCT 22001093 Query 165345 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 165404 ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| | ||| Sbjct 22001094 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 22001153 Query 165405 ACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGT 165464 | || |||| | | ||||| ||| | ||||| ||||| || || ||||| Sbjct 22001154 ATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCC 22001213 Query 165465 CAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTA 165524 ||||| ||| | ||||| |||||||| ||||||||||| ||||| || ||||| || || Sbjct 22001214 CAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTT 22001273 Query 165525 TTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATC 165584 || || ||||| | || |||||| |||| || ||||| || ||||||||| |||| Sbjct 22001274 TTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATA 22001333 Query 165585 TTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 ||||| || || || | || | || ||||| ||||||| Sbjct 22001334 TTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 22001373 >seq4 Length=53719093 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080 |||||||| ||||| || || |||| || || || ||| | |||||||| || Sbjct 20464549 ACTCCTGAAGGAGAGCAAGAGGTTGAGTGCGACGACGACGTCTACGTCCTAGACGCTGCT 20464608 Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140 || ||||| ||| | || | ||||||||| ||||||||| | ||||| |||||| Sbjct 20464609 GAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCCTGCTCGAGCTGTGCA 20464668 Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200 |||||| |||| |||||| ||||||| ||| ||| ||| ||||| || ||||| ||| Sbjct 20464669 GGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 20464728 Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248 ||||| | ||||||||| || || |||| || ||||| || |||||| Sbjct 20464729 ATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGAT 20464776 >seq9 Length=54679868 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080 || || |||||||| || || |||| || || || ||| | || ||||| || Sbjct 13977694 ACACCAGAGGGAGAGCAAGAGGTTGAGTGCGACGACGACGTTTACGTCCTCGACGCTGCG 13977635 Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140 || |||||||| | || | ||||||||| ||||| ||| ||||||| |||||| Sbjct 13977634 GAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGCTCGAGCTGTGCA 13977575 Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200 |||||| |||| ||||| ||||||| ||| ||| ||| ||||| || ||||| ||| Sbjct 13977574 GGTAAAGTTGTGTCTGGTTCTGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 13977515 Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248 ||||| | ||| || || || || |||| || |||||||| |||||| Sbjct 13977514 ATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCAACTTCTGAT 13977467 >seq6538 Length=695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 199/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || ||||| |||||||| || |||||||| || | || || Sbjct 400 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 459 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||| || || | || |||||| | || || ||| | ||||| || ||| Sbjct 460 CCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 519 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || || ||||| | ||| ||||||| | |||||| || ||| | || || || || Sbjct 520 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 579 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || |||||| | | | | |||| | | | |||| ||||||||||| | || Sbjct 580 TCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 639 Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 164914 ||| | ||| || ||||| ||| | || || || ||| ||| || ||||| || Sbjct 640 GGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562978078613680