Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 232 1e-55 seq7 219 8e-52 seq3 89.7 1e-12 >seq2 Length=52886895 Score = 232 bits (256), Expect = 1e-55 Identities = 454/664 (68%), Gaps = 13/664 (2%) Strand=Plus/Plus Query 48037 GAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGA 48096 || ||||||| |||| |||| ||| || || | ||| ||| ||| ||||| || || Sbjct 45186884 GACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACTTCACGCGCTCTTCCGA 45186943 Query 48097 GGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTC 48156 | || | | || | | || ||||| || ||| || ||||| | ||| | |||||| Sbjct 45186944 TAGCTTCGTCCTCAAGAG---GGTATAGATCAGGCACGCGAAGTCGCAGTGAAGGCCTTC 45187000 Query 48157 GTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAG 48216 ||| || ||| ||| ||||||||||| ||| || ||||||| ||| | || ||||| Sbjct 45187001 GTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCACGCTTCTTGAG 45187060 Query 48217 CCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGT 48276 |||||| || | ||| || ||||||||||| || || || |||||||| Sbjct 45187061 CCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAACGCCAC 45187120 Query 48277 GAGCCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCT 48335 || |||||| |||||| | | || ||| |||||| | ||||| | |||| Sbjct 45187121 GATCCTCTCGGCGAAAGTCTGAGATCC-GTC---GATCCACTTCATGGCCCATTGGGCCT 45187176 Query 48336 TCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGC-G 48394 ||||| || ||| || || ||||| || || |||||||| | | | ||| | || | Sbjct 45187177 TCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCTCTC-CTTGTTG 45187235 Query 48395 TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCG 48454 ||| | || ||| | || ||||||||| ||||| | |||||| || ||| Sbjct 45187236 TCCTTGATGTACGTATCTAACAAGAGACTGTACATCTCCGAGTGGATATTCTCGATCGCG 45187295 Query 48455 ATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCC 48514 |||||||||||||||||||| | ||||| | |||||||| || | ||| | Sbjct 45187296 ATCTGGAACCCGTAGAAGGCGCGCGCCTCGGAGACCTGCACGTCGGACATGAACCGGGTG 45187355 Query 48515 AGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGG 48574 |||||||| || ||||| || || || || |||||||| ||||| ||||| | | Sbjct 45187356 GCGAGATTCTCGAGAACGATCCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATG 45187415 Query 48575 AAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTCC 48631 || |||||||| || | |||| || |||| | || ||||| | ||||| Sbjct 45187416 AAGTGGCGCTCTCCGTCGTCGAGATTGTTCTCCCAGTCGCGTGTGTCTTGGGAGAGGTCG 45187475 Query 48632 ACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGA 48691 |||||||| | ||||||||||| || ||||| |||||||| |||| || | ||| Sbjct 45187476 ACTTCTTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAGATCTGCGGG 45187535 Query 48692 TAGT 48695 |||| Sbjct 45187536 TAGT 45187539 >seq7 Length=48366697 Score = 219 bits (242), Expect = 8e-52 Identities = 446/656 (68%), Gaps = 10/656 (2%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| || || || | || ||| ||| ||||| ||| | | | Sbjct 33023850 AAACTCCCTCTCGATCTCGACCGCGTCGCAGACGATCGACTTCACGCGCTCCTCCGTGAG 33023909 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | |||| | || ||||| || |||||| || || | ||||||||||||||| Sbjct 33023910 CTTCGTCCTCAGGAG---GGTATAGATCAGGCAGGCGAAATCGCAGTGCAAGCCTTCGTC 33023966 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 ||| ||| | | ||||||||||| | |||||||||| ||| | || || ||||| Sbjct 33023967 TCGGGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTCTTAAGCCA 33024026 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || ||||||||||| || || || ||||| ||| || Sbjct 33024027 GAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAGGCGACGAT 33024086 Query 48280 CCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 |||||| |||||| | | || || |||||| | | ||||| | ||||||| Sbjct 33024087 CCTCTCGGCGAAAGTCTGAGATCCA-TC---GATCCACGTCATGGCCCATTGGGCCTTCT 33024142 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGC-GTCC 48397 || || ||| || || || || || || ||||| || | | | ||| | || |||| Sbjct 33024143 TCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAAAGGTGGTCCCTCTC-CTTGTTGTCC 33024201 Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457 | || || |||||| ||||||||| ||||| | |||||| || |||||| Sbjct 33024202 TTGATGTACGTGTCGAGCAGGAGGCTGTACATCTCTGAGTGGATATTCTCAATCGCGATC 33024261 Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 ||||||||||||||||| | ||||| | || ||||| || | ||| | | Sbjct 33024262 TGGAACCCGTAGAAGGCACGCGCCTCGGAGACTTGCACGTCGGACATGAACCGCGAGGCG 33024321 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 |||||||| || || || ||||| || || |||||||| ||||| ||||| | ||| Sbjct 33024322 AGATTCTCCAAAACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAG 33024381 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 || ||||| || | ||||| | |||| | | ||||| | ||||| |||||| Sbjct 33024382 TGTCGCTCTCCGTCGTTGAGATTCTCCCAGTCGCGATTGTCTTGGGAGAGGTCGACTTCT 33024441 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || | |||||||| || || || || |||||||| |||| || | ||| || Sbjct 33024442 TCGGCGGTCCAGAAAGAGGCTTCGGCCTTCTTGTACATCTCCCAGATCTGCGGGTA 33024497 >seq3 Length=64984695 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||||| |||| || ||| ||| ||||| ||| | | Sbjct 52386124 AAACTCCCTCTCGATCTCGACGGCGTCCCAGACGATCGACTTCACGCGCTCCTCCTTGAG 52386065 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAA-GCCTTCGT 48158 || | | |||| | || |||| || |||||| || || | |||||| ||| |||| Sbjct 52386064 ATTCGTCCTCAGGAGGGTG---TAGATCAGGCAGGCGAAATCGCAGTGCAAAGCCGTCGT 52386008 Query 48159 CCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCC 48218 | || ||| | | ||||||||||| | ||||||||||| ||| | | ||||||| Sbjct 52386007 CTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATGAGCCCTCGTTTCTTGAGCC 52385948 Query 48219 AGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 |||| || | ||| || ||||||||||| || || Sbjct 52385947 AGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTC 52385908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931149870154240