Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 156 8e-33 seq7 145 1e-29 >seq2 Length=52886895 Score = 156 bits (172), Expect = 8e-33 Identities = 437/655 (67%), Gaps = 23/655 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || ||| ||||||||||||||| | || || Sbjct 45187528 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAAGTCGACCTC 45187469 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACG---AGCAGCATTTTCTCAA 25592 || | |||| || |||| | | | ||| | | |||| ||| || || |||| Sbjct 45187468 TCCCAAGACACACGCGACTGGGA-GAACAATCTCGACGACGGAGAGCGCCACTTCATCAA 45187410 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || || || || ||||||||| | | Sbjct 45187409 ACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTTCTCGAGAATCTCGCCACCCG 45187350 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || |||||| | ||||| |||||||| |||||||| || || Sbjct 45187349 GTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCGAT 45187290 Query 25713 CGAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTTCT--GATGACGTACATTACAGACGT 25769 ||| ||| | ||||| ||| |||| | | ||| | ||| |||||||| | ||| Sbjct 45187289 CGAGAATATCCACTCGGAGATGTACAGTCT--CTTGTTAGAT-ACGTACATCAAGGACAA 45187233 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | ||||| || | || || | || || ||| ||| || || || || |||||| Sbjct 45187232 CAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAAGAAGGC 45187173 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||||||||||||||| || | | || || || | |||| || | || | Sbjct 45187172 CCAATGGGCCATGAAGTGGATCGACGGATCTCAG----ACTTTCGCCGAGAGGATCGTGG 45187117 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 | || ||| || || || ||||| ||| |||| || ||| | |||||||||||| Sbjct 45187116 CGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCT-CGATCTTCTGGCTC 45187058 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| |||||| ||||| ||| ||||||||||| ||| | ||||| Sbjct 45187057 AAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGAGACGAA 45186998 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT-TC 26066 || || ||| | || || || |||||| |||| || || |||| || || || || Sbjct 45186997 GGCCTTCACTGCGACTTCGCGTGCCTGATCTATAC---CCTCTTG-AGGACGAAGCTATC 45186942 Query 26067 TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 ||||| ||| | ||| | || || ||||||||||||| ||||||| Sbjct 45186941 GGAAGAGCGCGTGAAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTT 45186887 >seq7 Length=48366697 Score = 145 bits (160), Expect = 1e-29 Identities = 383/575 (67%), Gaps = 21/575 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| || ||| ||||||||||||||| | || || Sbjct 33024488 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCTTTCTGGACCGCCGAAGAAGTCGACCTC 33024429 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACG---AGCAGCATTTTCTCAAG 25593 || | |||| || |||| | ||| ||| |||| ||| || || |||| Sbjct 33024428 TCCCAAGACAATCGCGACTGGGAGAATCT---CAACGACGGAGAGCGACACTTCATCAAA 33024372 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||||| | | | Sbjct 33024371 CACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTTTGGAGAATCTCGCCTCGCGG 33024312 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCAT 25712 |||| || ||||| | ||||| ||| |||||||| |||||||| || || Sbjct 33024311 TTCATGTCCGACGTGCAAGTCTCCGAGGCGC-GTGCCTTCTACGGGTTCCAGATCGCGAT 33024253 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || ||| | ||||| ||| |||| || || ||| | |||||||| | ||| Sbjct 33024252 TGAGAATATCCACTCAGAGATGTA---CAGCCTCCTGCTCGACACGTACATCAAGGACAA 33024196 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | ||||| || | || || | || || || ||| || || || || |||||| Sbjct 33024195 CAAGGAGAGGGACCACCTTTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAAGAAGGC 33024136 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||||||| ||||||| | | | || || || | |||| || | || | Sbjct 33024135 CCAATGGGCCATGACGTGGATCGATGGATCTCAG----ACTTTCGCCGAGAGGATCGTCG 33024080 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 |||| ||| || || || ||||| ||| |||| || ||| | ||||||||||| Sbjct 33024079 CCTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCT-CGATCTTCTGGCTT 33024021 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| |||||| ||| | ||| ||||||||| | ||| | | ||||| Sbjct 33024020 AAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCCCGAGACGAA 33023961 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 || | ||| | ||||| ||||||||| |||| || Sbjct 33023960 GGCTTGCACTGCGATTTCGCCTGCCTGATCTATAC 33023926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928462975123840