Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 5e-12 seq9 82.4 6e-11 >seq1 Length=43764888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| ||||| ||||| | || || || ||||| ||||||||||| || || Sbjct 35467095 AAAATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGAGGCTTATCTTTGCTGGAAAG 35467154 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 |||||||||||| | || |||||||||| |||||||| || || ||||| || ||| Sbjct 35467155 CAATTGGAAGATGGCAGGACCTTGGCCGATTACAACATTCAGAAGGAGTCTACGCTTCAC 35467214 Query 28758 ATGGT 28762 |||| Sbjct 35467215 TTGGT 35467219 >seq9 Length=54679868 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| || || || || || || || || ||| ||| || || Sbjct 53991730 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 53991789 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| ||| | | | || ||||| || || ||||| || || | || || || Sbjct 53991790 AGACACGATAGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCA 53991849 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| ||||| || || ||||| | || ||| || ||| |||| ||||| || Sbjct 53991850 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 53991909 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| || || || || ||||| ||| Sbjct 53991910 CATCCAGAAGGAGTCGACTCTTCAC 53991934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425234298553794