Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 7e-14 >seq3 Length=64984695 Score = 91.5 bits (100), Expect = 7e-14 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| ||||| || ||||| ||||| || ||||| | ||||| ||||||||||| || Sbjct 53582220 TACCCTTTCTCTTGCCTCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCA 53582279 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||||| | ||| | || ||| ||||||| | |||| | ||| || | | Sbjct 53582280 GCATTGGAAGAATACCATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCAC 53582339 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 || | |||| | || |||||| || ||||| |||| ||| | ||||| ||| Sbjct 53582340 GGATGTTGTGAACTGAAACACCGATACCCCCAGCTGATTTACTTATAACAGCACACTCTT 53582399 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| | ||||| | ||||||||| | ||||| Sbjct 53582400 TCAAGGTATCATATATTCCCTCGATGCTATCATCCTTCAT 53582439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252938582042450