Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3 372 4e-98 seq5 219 5e-52 seq6538 131 2e-25 seq1 91.5 2e-13 >seq3 Length=64984695 Score = 372 bits (412), Expect = 4e-98 Identities = 705/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 33665117 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 33665176 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | |||||| || || |||||||| Sbjct 33665177 ATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAA 33665236 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 33665237 AGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 33665296 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | |||||||| || | || | || |||| | ||| | || || || Sbjct 33665297 TAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTAC 33665356 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || ||||| Sbjct 33665357 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGA 33665416 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 33665417 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 33665476 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || ||||| | || || Sbjct 33665477 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 33665515 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || |||| | || | || |||| || || || Sbjct 33665516 ATTTTCTACAGTAGCACCATGAATAGCGCATAACAGAGCCGCGCCCAGTACACCAGCGAC 33665575 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||||||| || || || ||||| | || | ||| | Sbjct 33665576 TCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAA 33665635 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || || || ||||| || || || |||||||||| ||||||||||| Sbjct 33665636 TCGAAATATAGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGG 33665695 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || ||||||| | || || || || | |||||||||||| ||| || || Sbjct 33665696 ATAAATTAGAAAGACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATA 33665755 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| || || | |||||||| | | ||| |||||||| | | | Sbjct 33665756 AGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 33665815 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | || || || ||||| ||| ||||| || | ||| |||||||| || Sbjct 33665816 GAAAGCACCGTGGTGAGCAACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAA 33665875 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | ||| | | | | |||| Sbjct 33665876 ATCTCCTTGTGCTTCAGGACCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGG 33665935 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || ||||| || ||||| || || || || | ||| ||| || | ||||| Sbjct 33665936 AGTAGAAACTGCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATG 33665995 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| || Sbjct 33665996 AGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGC 33666055 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||||||||| |||| || || || || || ||| |||||| Sbjct 33666056 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCA 33666115 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 33666116 GTCATCCATAATATCAAA 33666133 >seq5 Length=46902585 Score = 219 bits (242), Expect = 5e-52 Identities = 409/601 (68%), Gaps = 21/601 (3%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 22001372 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 22001313 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | |||||| || || |||||||| Sbjct 22001312 ATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAA 22001253 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 22001252 AGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 22001193 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | |||||||| || | || | || |||| | ||| | || || || Sbjct 22001192 TAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTAC 22001133 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || ||||| Sbjct 22001132 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGA 22001073 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 22001072 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 22001013 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| ||| ||| | |||||| | || || Sbjct 22001012 ACGGAA---TGTA-TTTG-----CACCATCACCA------------TCTTCAAATAAAGT 22000974 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| ||||||| | || | || |||| || || || Sbjct 22000973 ATTTTCTACAGTAGCACCATGAATAGCACATAACAGAGCCGCGCCCAGTACACCAGCGAC 22000914 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||||||| || || || ||||| | || | ||| | Sbjct 22000913 TCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAA 22000854 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || || || ||||| || || || |||||||||| ||||||||||| Sbjct 22000853 TCGAAATATAGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGG 22000794 Query 123466 A 123466 | Sbjct 22000793 A 22000793 >seq6538 Length=695 Score = 131 bits (144), Expect = 2e-25 Identities = 210/302 (70%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 123602 GCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAATGATCCTTGTGCTTCA 123661 || ||||| ||| ||||| || | ||| |||||||| ||| |||||||||||| Sbjct 689 GCAACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTGAAGTCCCCTTGTGCTTCA 630 Query 123662 GGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGGTGTGGAGACTGCTGCT 123721 || ||||| || |||| | | ||| | | | | |||| || || ||||| || Sbjct 629 GGACCCCACAGTAACAACAAAAAATGCGCTAAACTTTTAGCAGGAGTAGAAACTGCAGCG 570 Query 123722 GTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATGTGTATACCATGATGTA 123781 ||||| || || || || | ||| ||| || | ||||| ||||||||||| || Sbjct 569 GTTAAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTT 510 Query 123782 ACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGCACAAGGCAGAAGTAAA 123841 || ||||| || ||| ||||||||| || | | || |||||||| | || || Sbjct 509 ACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGGAATTGGCACAAGGAAAGAGCAAT 450 Query 123842 AGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCAGTCGTCAAGAACATCA 123901 ||||||||||| |||| || || || || || ||| ||||||||| || | || |||| Sbjct 449 AGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCA 390 Query 123902 AA 123903 || Sbjct 389 AA 388 >seq1 Length=43764888 Score = 91.5 bits (100), Expect = 2e-13 Identities = 182/267 (68%), Gaps = 17/267 (6%) Strand=Plus/Minus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || ||||| || || |||||||||||||| ||||| | Sbjct 3020552 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTATCCCTCCTAATATGCTGCTCCCTAGTCT 3020493 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGT-------CCACTGACTGACCTACA 139427 | | || | || |||| || |||| | || |||| || ||| | | Sbjct 3020492 GCATAGCCA-----TACGCAGAGCTGGCTTCCCAGTAGAATCAACACTAAC--ACCAATA 3020440 Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487 || || || || ||| | |||||||||| | || || || || ||||| || ||| Sbjct 3020439 ATCCTCCCCGGCATCATCCTCTTATACTCCGAAGAAGTAGCCAAAAAAGCAGCGTGGGGA 3020380 Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCC 139547 || ||||| ||||| |||| |||||||| || ||| || ||||||| | ||| Sbjct 3020379 CCACCGTAACCCATCGGAACGCCAAACCTCTGAGCCGAACCAACGACAATATC--AGCCC 3020322 Query 139548 CACTCACCTACAGGTTGCATTAACACC 139574 || | || |||| || |||||||| Sbjct 3020321 CAAACTCC-CCAGGAGGCTTTAACACC 3020296 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | ||| || |||||||| ||||| | ||||| || ||||||||||| Sbjct 3022328 AAATGGTGCTAAATGCTTCTTCACACCAATGGGACCCATTCCAGGCCCACCACCTCCATG 3022269 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 3022268 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 3022220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578760388232720