Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3 518 4e-142 seq5 298 7e-76 seq9 140 4e-28 seq6538 123 3e-23 seq4 122 1e-22 seq1 118 1e-21 seq8 102 1e-16 >seq3 Length=64984695 Score = 518 bits (574), Expect = 4e-142 Identities = 728/1019 (71%), Gaps = 2/1019 (0%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | ||| || | |||||| | || |||||| || || | Sbjct 33665116 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 33665175 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| | || | || | ||| || | ||||||||| || |||| Sbjct 33665176 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 33665235 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | |||||| || ||||| || || || || || ||||| |||| Sbjct 33665236 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 33665295 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || | ||| || || | | |||| || | | ||| | ||| | || || | Sbjct 33665296 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTA 33665355 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||||| Sbjct 33665356 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 33665415 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| || || || | ||||| | | || | Sbjct 33665416 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 33665475 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || ||||| || ||||||||| | | ||||| || |||||| | |||| Sbjct 33665476 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 33665535 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | | || || | ||||||| |||||| |||||||||||||| || |||| Sbjct 33665536 GAATAGCGCATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGT 33665595 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | | ||||| |||||||| || |||| ||||| | ||| | || || ||||| |||| Sbjct 33665596 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 33665655 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| || || || | ||||| || || || ||||| | Sbjct 33665656 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGAAAGACAGAAA 33665715 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA- 24044 | || |||||||| |||||||| || || || ||||| || || || | | || ||| Sbjct 33665716 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAA-CAGAT 33665774 Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || |||||||| |||||||||||||||||||| | ||| || ||||||||| ||||| Sbjct 33665775 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCACCGTGGTGAGCA 33665834 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 ||||| | ||| || || || | ||| ||| || ||| || ||||| | |||||| Sbjct 33665835 ACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 33665894 Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTA 24224 ||||| |||| | | |||||| | | | | |||||| || || || || || || Sbjct 33665895 CCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTT 33665954 Query 24225 AGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACA 24284 | ||| || ||| || | |||||||||||| | |||||| || ||||| || ||| Sbjct 33665955 AAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACA 33666014 Query 24285 AAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGT 24344 || | ||| || || | |||||| || | || | ||| ||| |||| || | || Sbjct 33666015 AAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACAAGGAAAGAGCAATAGA 33666074 Query 24345 CCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 ||||||||||| ||||| || ||||| |||| | |||||| |||| || ||||| Sbjct 33666075 CCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 33666133 >seq5 Length=46902585 Score = 298 bits (330), Expect = 7e-76 Identities = 404/563 (72%), Gaps = 0/563 (0%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | ||| || | |||||| | || |||||| || || | Sbjct 22001373 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 22001314 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| | || | || | ||| || | ||||||||| || |||| Sbjct 22001313 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 22001254 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | |||||| || ||||| || || || || || ||||| |||| Sbjct 22001253 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 22001194 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || | ||| || || | | |||| || | | ||| | ||| | || || | Sbjct 22001193 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTA 22001134 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||||| Sbjct 22001133 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 22001074 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| || || || | ||||| | | || | Sbjct 22001073 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 22001014 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || ||||| || ||||||||| | | ||||| || |||||| | |||| Sbjct 22001013 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 22000954 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 |||||||| | | || || | ||||||| |||||| |||||||||||||| || |||| Sbjct 22000953 GAATAGCACATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGT 22000894 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | | ||||| |||||||| || |||| ||||| | ||| | || || ||||| |||| Sbjct 22000893 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 22000834 Query 23926 CGAAACTCGGCGCAAAGAACCAA 23948 | ||||| ||||||||||||||| Sbjct 22000833 CAAAACTAGGCGCAAAGAACCAA 22000811 >seq9 Length=54679868 Score = 140 bits (154), Expect = 4e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 32633 GTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCA 32692 || ||||| ||||||||||||||||||| || |||||||||| ||||||||||| || Sbjct 13977453 GTCTCAATGGTAACATCAGAAGTTGGATAAGCCGCACAAGTGAGAACAAACCCTTCAGCA 13977512 Query 32693 ATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTA 32752 || || |||||||| | ||| ||| ||| ||||| || | |||||| |||| ||| Sbjct 13977513 ATCTGGTCATCATCGAGGAAACTCTGGTCAGACTGGTCAACAGAACCAGACACAACTTTA 13977572 Query 32753 CCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCC 32812 |||||||| || || | ||| ||||| |||||||| || || | ||| ||||| Sbjct 13977573 CCTGCACAGCTCGAGCAAGAACCGGCACGGCAAGAGTAAGGCAAGTCGATCCCTGCTTCC 13977632 Query 32813 TCTGCTGCATCAAGGATGTA 32832 || || || || |||| ||| Sbjct 13977633 TCCGCAGCGTCGAGGACGTA 13977652 >seq6538 Length=695 Score = 123 bits (136), Expect = 3e-23 Identities = 212/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 24096 TGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGA 24155 || ||||||||||| | ||| || || || | ||| ||| || ||||||||||| Sbjct 695 TGAAGAGCAACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTGAAGTCCCCTTGT 636 Query 24156 GACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACA 24215 | ||||||||||| |||| | | | |||| | | | | |||||| || || || Sbjct 635 GCTTCAGGACCCCACAGTAACAACAAAAAATGCGCTAAACTTTTAGCAGGAGTAGAAACT 576 Query 24216 GCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAA 24275 || || || | ||| || ||| || | |||||||||||| | |||||| || ||||| Sbjct 575 GCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCAT 516 Query 24276 CTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGA 24335 || ||||| | ||| || || | |||||| || | || || ||| |||| Sbjct 515 GAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGGAATTGGCACAAGGAAAG 456 Query 24336 AGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAG 24395 || | || ||||||||||| ||||| || ||||| |||| | |||||| |||| Sbjct 455 AGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATA 396 Query 24396 ATGTCAAA 24403 || ||||| Sbjct 395 ATATCAAA 388 >seq4 Length=53719093 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 32633 GTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCA 32692 || ||||| ||||||||||||| ||||| || |||||||||| || || ||||| || Sbjct 20464790 GTCTCAATGGTAACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACGAATCCTTCCGCA 20464731 Query 32693 ATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTA 32752 || || |||||||| | ||| ||| ||| ||||| || | ||||| |||| ||| Sbjct 20464730 ATCTGGTCATCATCGAGGAAACTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTA 20464671 Query 32753 CCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCC 32812 |||||||| || |||| ||| ||||| |||||||| || || | || ||||| Sbjct 20464670 CCTGCACAGCTCGAGCAGGAACCAGCACGGCAAGAGTAAGGCAAGTCGATTCCGGCTTCC 20464611 Query 32813 TCTGCTGCATCAAGGATGTA 32832 || || || || |||| ||| Sbjct 20464610 TCAGCAGCGTCTAGGACGTA 20464591 Score = 86.0 bits (94), Expect = 8e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 32657 GGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGAC 32716 || || || |||||||| | ||| | |||| |||| |||| ||| || | ||||| Sbjct 16040229 GGGTAAGCCACACAAGTCAAGACATAACCTTTCTCAAAGTGATGATCCTCAAGAAACGAA 16040170 Query 32717 TGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCT 32776 ||||| ||||| ||| ||| | |||||||| || || | ||||||||||| Sbjct 16040169 CCATCACCCTGGTCAACTTGACCTTTCTCGATCTTACCGGCGCAGGTGGAACAGGCACCG 16040110 Query 32777 GCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGA 32836 || | |||||||| || ||||| ||| |||| || |||||||| | ||||| || Sbjct 16040109 GCTCTGCAAGAGTAAGGCAAGTCAACTCCAGCTTCTTCAGCTGCATCCAATATGTACTGG 16040050 Query 32837 TCATC 32841 || || Sbjct 16040049 TCGTC 16040045 >seq1 Length=43764888 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 32633 GTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCA 32692 || ||||| |||||||||| || ||||| || |||||||||| ||||||||||| || Sbjct 27930752 GTCTCAATGGTAACATCAGAGGTAGGATAAGCCGCACAAGTGAGAACAAACCCTTCAGCA 27930693 Query 32693 ATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTA 32752 || || |||||||| | ||| ||| ||| ||||| || | ||||| |||| || Sbjct 27930692 ATCTGGTCATCATCGAGGAAACTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTG 27930633 Query 32753 CCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCC 32812 || ||||| ||| || | ||| ||||| |||||||| || || | ||| |||| Sbjct 27930632 CCGGCACAGCTTGAGCACGAACCAGCACGGCAAGAGTAAGGCAAGTCGATCCCGGCTTCT 27930573 Query 32813 TCTGCTGCATCAAGGATGTA 32832 || || || || |||| ||| Sbjct 27930572 TCCGCAGCGTCGAGGACGTA 27930553 >seq8 Length=41758685 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | ||||| || | |||||||||||||| || || ||||| ||||| ||| Sbjct 19692599 TCTTCTTTGTGGGTTTCGATGACGACATCAGAAGTTGGGTAAGCCACACATGTGAGGACA 19692540 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 |||| || | || || ||||| || ||||| ||| || | ||||| || | ||| Sbjct 19692539 TACCCCTCGTTCATCTGGTCATCGTCTAAGAAGCTCTGGTCCGTCTGGTCAACGGAGCCA 19692480 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || || | || ||||| || ||| || | || ||||| || ||||| ||||| Sbjct 19692479 GAGACGACTTTCCCTGCGCAGCTTGAGCAAGATCCCGCACGGCATGAGTAAGGCAAATCG 19692420 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATC 32841 | || ||||||| || || || |||| ||| |||||| Sbjct 19692419 ATACCTGCTTCCTCCGCCGCGTCGAGGACGTAGACATCATC 19692379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665220831889520