Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq8 118 1e-21 seq6 111 2e-19 seq2 104 3e-17 seq1 98.7 1e-15 seq7 87.8 2e-12 seq4 87.8 2e-12 >seq5 Length=46902585 Score = 127 bits (140), Expect = 2e-24 Identities = 299/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || ||||| |||||| ||| Sbjct 2378851 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTCGGTGCTCGGATCCCGAAAGGT 2378792 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||||| ||| || ||||| || || || ||| | || ||||| || ||| Sbjct 2378791 GTTCTTCTCGTTGGTCCTCCCGGTACTGGGAAAACACTCTTGGCAAAGGCCATTGCTGGT 2378732 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| | Sbjct 2378731 GAAGCTGGTGTACCTTTCTTTTCCAT--CTCGGGGTCTGAGTTTGTTGAGATGTTTGTCG 2378674 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| ||||| || ||||| || ||| ||| || || || |||| Sbjct 2378673 GTGTTGGTGCTTCGAGGGTCCGTGATCTTTTCAAAAAGGCCAAGGAGAACGCTCCTTGTA 2378614 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT---GGTATGC 175531 ||||||| |||||||||||||||| || || | ||| | | ||||| ||| Sbjct 2378613 TTGTCTTTGTTGATGAGATTGATGCTGTTGGTAGGCAGAGAGGGACTGGTATCGGT---G 2378557 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || |||| || || || || ||||||||||| |||| Sbjct 2378556 GAGGTAATGATGAAAGAGAACAGACGCTTAACCAGCTTCTGACGGAGATGGATGGTTTTG 2378497 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651 | | | ||||| || | || |||| || || || | | ||||| ||||| || Sbjct 2378496 AAGGTAACACTGGTGTTATCGTGGTTGCTGCAACCAACAGAGCTGATATTCTTGACTCCG 2378437 Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || | | | || || |||||||| || Sbjct 2378436 CCTTGTTGAGACCAGGACGTTTTGACCG 2378409 Score = 127 bits (140), Expect = 2e-24 Identities = 299/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || ||||| |||||| ||| Sbjct 2392232 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTCGGTGCTCGGATCCCGAAAGGT 2392173 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||||| ||| || ||||| || || || ||| | || ||||| || ||| Sbjct 2392172 GTTCTTCTCGTTGGTCCTCCCGGTACTGGGAAAACACTCTTGGCAAAGGCCATTGCTGGT 2392113 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| | Sbjct 2392112 GAAGCTGGTGTACCTTTCTTTTCCAT--CTCGGGGTCTGAGTTTGTTGAGATGTTTGTCG 2392055 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| ||||| || ||||| || ||| ||| || || || |||| Sbjct 2392054 GTGTTGGTGCTTCGAGGGTCCGTGATCTTTTCAAAAAGGCCAAGGAGAACGCTCCTTGTA 2391995 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT---GGTATGC 175531 ||||||| |||||||||||||||| || || | ||| | | ||||| ||| Sbjct 2391994 TTGTCTTTGTTGATGAGATTGATGCTGTTGGTAGGCAGAGAGGGACTGGTATCGGT---G 2391938 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || |||| || || || || ||||||||||| |||| Sbjct 2391937 GAGGTAATGATGAAAGAGAACAGACGCTTAACCAGCTTCTGACGGAGATGGATGGTTTTG 2391878 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651 | | | ||||| || | || |||| || || || | | ||||| ||||| || Sbjct 2391877 AAGGTAACACTGGTGTTATCGTGGTTGCTGCAACCAACAGAGCTGATATTCTTGACTCCG 2391818 Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || | | | || || |||||||| || Sbjct 2391817 CCTTGTTGAGACCAGGACGTTTTGACCG 2391790 >seq8 Length=41758685 Score = 118 bits (130), Expect = 1e-21 Identities = 297/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||||||| | || ||||| | || || || |||||| ||| Sbjct 1371254 GTGGAGTTTCTCAAGAAGCCTGAGAGGTTCACTGCGGTCGGCGCTCGGATCCCTAAAGGT 1371195 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||| |||| ||| || ||||| || || |||||| | ||| |||||| || ||| Sbjct 1371194 GTCCTCCTCGTTGGTCCTCCCGGTACTGGTAAAACCCTCTTGGCCAAAGCCATTGCTGGT 1371135 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | || || ||||||||||| | Sbjct 1371134 GAAGCCGGTGTGCCTTTCTTTTCCAT--CTCGGGGTCTGAGTTCGTTGAGATGTTTGTCG 1371077 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| ||||| || ||||| || | | || || ||| || || | Sbjct 1371076 GTGTTGGTGCTTCGAGGGTGCGTGATCTTTTCAAGAAGGCTAAGGAGAATGCGCCGTGCA 1371017 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 ||||||| | || ||||||||||| || || | ||| | | |||| |||| Sbjct 1371016 TTGTCTTTGTGGACGAGATTGATGCTGTTGGTAGGCAGAGAGGGACTGGGATTGGTGG-- 1370959 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || ||||| || || | || || || | || ||||||||||| |||| Sbjct 1370958 -AGGTAATGATGAAAGAGAGCAGACCTTGAACCAGCTCTTGACTGAGATGGATGGGTTTG 1370900 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651 | | | ||||| | | ||| |||| || |||||| | | ||||| ||||| || Sbjct 1370899 AGGGTAACACTGGTGTCATTGTTGTTGCTGCAACTAATAGAGCTGATATTCTTGACTCCG 1370840 Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || | || | || || |||||||| || Sbjct 1370839 CCTTGCTGAGACCAGGGCGTTTTGACCG 1370812 >seq6 Length=39822476 Score = 111 bits (122), Expect = 2e-19 Identities = 216/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||| ||| ||| || |||| |||| || || || || ||||| || Sbjct 32774269 GGCGCCAAGATTCCCAAAGGGTGTCTCCTCGTGGGTCCCCCCGGGACTGGTAAGACTCTG 32774210 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 | || |||| | || || ||| | || || ||| || ||| | || | | Sbjct 32774209 TTAGCTAGAGCTGTGGCTGGAGAAGCCGGAGTGCCGTTCTTCTCCTGCGCGGCGTCTGAG 32774150 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||| | || ||||||||||||||| |||||| | ||| | || || | ||| Sbjct 32774149 TTTGTTGAGCTTTTCGTTGGTGTGGGTGCCTCTAGGGTTAGGGATTTGTTCGAGAAGGCC 32774090 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || |||||||| || ||||||||||||||||| || || | ||| | Sbjct 32774089 AAGGCCAAGGCGCCTTGTATTGTTTTTATTGATGAGATTGATGCTGTTGGGAGGCAGAGA 32774030 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | ||||| ||| | | || ||||| ||||| || || || |||||||| || | | Sbjct 32774029 GGAGCTGGGATGGGAGG--AGGGAATGATGAGAGGGAGCAGACGATTAATCAGCTCTTGA 32773972 Query 175574 CCGAGATGGATGGCTTT 175590 | ||||||||||| ||| Sbjct 32773971 CTGAGATGGATGGGTTT 32773955 >seq2 Length=52886895 Score = 104 bits (114), Expect = 3e-17 Identities = 141/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 ||||||||| ||||||| ||||| ||| | ||| | |||| | ||||||||| | Sbjct 45187181 GAAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA---TCTCAGACTTTCGCCGAGAG 45187125 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | | ||||| || || || || || |||||||||||||| |||||| | || | Sbjct 45187124 GATCGTGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTT 45187065 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| || |||||||| || || |||||| || || || || || || Sbjct 45187064 CTGGCTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCG 45187005 Query 65202 AGATGAGGGTCTCCAC 65217 ||| || || || ||| Sbjct 45187004 AGACGAAGGCCTTCAC 45186989 Score = 100 bits (110), Expect = 3e-16 Identities = 280/424 (66%), Gaps = 17/424 (4%) Strand=Plus/Plus Query 177549 GAAGCACATTTCAACAAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGCGACAACATATT 177607 |||| ||| || | ||||| |||| || | ||| | |||| | || || || ||||| | Sbjct 52342595 GAAGGACACGTCCAGAAACT-CCTCGACGGTGTGCGACTCCTCAGTAGCCACCACATAGT 52342653 Query 177608 CATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGAC 177667 |||| | | || || || ||||| |||||||| || || || |||||| || | Sbjct 52342654 CATCTGGTTTCTCCTGCTGCAGCATCAGCCACATTGCCTCCACGTAGTCCCCTGCGAACC 52342713 Query 177668 CCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAA 177727 |||||||||| | || | | ||| || || | || || ||| | || | Sbjct 52342714 CCCAGTCTCTTGAGGCCTGTATGTTCCCCAGG---AAGAGCTTCGTCTG--CAGTCCGAC 52342768 Query 177728 TTTGTTTGACGCCATCA-----GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGG 177782 ||| | | ||| || |||||| || || |||| | |||| | || Sbjct 52342769 CTTGATCCTCCCCAAGGCCCGTGTTATCTTCCGAGTCACGAAGTTCTCGCCTCTGCGGGG 52342828 Query 177783 TGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATT 177842 ||| ||||||||||| ||||| ||| |||||| |||| || || | ||||| |||||| Sbjct 52342829 TGACTCGTGGTTGAACAGGATCCCGTTGCAGGCGTACAGGCCGTATGCTTCTCTGTAATT 52342888 Query 177843 TTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGG 177902 | | ||||||||| || | ||||||| | ||||| |||| |||| || || Sbjct 52342889 GACGGTGTACCAGTGAGCTGCGACTTTGGAGGCAGCATAGGGAGATCTCGGGTGAAACGG 52342948 Query 177903 TGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTT 177961 ||| ||||| ||| |||| ||| || | || ||||||||||| | | ||| | Sbjct 52342949 CGTCGTCTCAGATTGGGGAG----GAGGAGTTGACCCGAACATCTCCGAGGATCCGGCCT 52343004 Query 177962 GGTA 177965 |||| Sbjct 52343005 GGTA 52343008 >seq1 Length=43764888 Score = 98.7 bits (108), Expect = 1e-15 Identities = 198/289 (69%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 177559 TCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCT 177618 |||| ||||| | ||| | || | |||| |||| || ||||| || ||||| |||| Sbjct 18203809 TCAAGAAACTCCTCCACGGTATGCGACTCCTCCGTGGCCACAACGTAATCATCCGCCTTC 18203750 Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTG 177678 ||||| || ||||| |||||||| ||||||||||| ||| || ||||||||||| Sbjct 18203749 TCTTGCTGCAGCATCAGCCACATCGCTTCAACATAATCCCCCGCGAACCCCCAGTCTCTC 18203690 Query 177679 GCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGACG 177738 | || | ||| || ||||| || || || || ||| | | || ||| | | Sbjct 18203689 GACGCCTGGAGATTCCCGAG---AAAGAGCT-TC-CTCTGCAAACCCACCTTGATCCTCC 18203635 Query 177739 CCA----TC-AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGT 177793 ||| || || |||||| | || || |||| | || || | ||| || ||||||| Sbjct 18203634 CCAAGGCTCTCGTTATCTTCCTCGTCACGAAGTTCTCTCCGCGGCGCGGGGACTCGTGGT 18203575 Query 177794 TGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATT 177842 |||| | ||| ||| |||||| | | ||| || | || ||||| || Sbjct 18203574 TGAACAAGATCCCGTTACAGGCAAAAAGACCGTAAGCCTCACGGTAGTT 18203526 >seq7 Length=48366697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 ||||||||| ||||||| |||| ||| | || | |||| | ||||||||| | Sbjct 33024144 GAAGAAGGCCCAATGGGCCATGACGTGGATCGATGGA---TCTCAGACTTTCGCCGAGAG 33024088 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | | || || || || || || || |||||||||||||| |||||| | || | Sbjct 33024087 GATCGTCGCCTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTT 33024028 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| || |||||||| || || |||||| || || | || ||||| Sbjct 33024027 CTGGCTTAAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCCCG 33023968 Query 65202 AGATGAGGG 65210 ||| || || Sbjct 33023967 AGACGAAGG 33023959 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Minus Query 177757 GTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCA 177816 ||||| |||| ||||||| | ||||| ||||||||||| ||||| | | ||||| Sbjct 24621294 GTGACGAAGTTCTCACCTCGGCGAGGTGACTCGTGGTTGAATAGGATCCTGTTACAGGCG 24621235 Query 177817 TACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTGAGCGGCCAATTTGGAG 177873 ||||| || || |||||||||||| ||| | |||||||||||| |||||||| Sbjct 24621234 TACATGCCGTATTCTTCTCGGTAATT---GACTGTGTACCAGTGAGCGGCGCATTTGGAG 24621178 Query 177874 ACGCCATAGACGGATCGTGGG 177894 | ||||| |||| |||| Sbjct 24621177 GCATCATAGGGAGATCTTGGG 24621157 >seq4 Length=53719093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/257 (68%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || || |||||||| ||||| ||||| ||||| || ||||| || | | ||| Sbjct 12371830 TTCGTTGAAATGTTTGTCGGTGTTGGTGCTTCCAGGGTCCGTGATCTTTTCAAGAAGGCC 12371771 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 || || || || |||||||| | ||||||||||| || || || | ||| | Sbjct 12371770 AAGGAGAACGCTCCTTGCATTGTCTTTGTAGATGAGATTGACGCCGTTGGTAGGCAGAGA 12371711 Query 175515 ----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| | | ||||| || ||||||||||||||||| || | || || || Sbjct 12371710 GGGACAGGGATCGGTGG------AGGTAATGACGAGAGAGAACAGACTTTGAACCAGCTG 12371657 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 | || ||||||||||| ||||| | | ||||| || | ||| |||| || || ||| Sbjct 12371656 TTAACTGAGATGGATGGGTTTGAAGGTAACACTGGTATCATCGTTGTTGCTGCGACCAAT 12371597 Query 175630 CGCGTGGATATCCTTGA 175646 | | || || ||||| Sbjct 12371596 AGAGCAGACATTCTTGA 12371580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596324365151680