Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq3 589 2e-163 seq5 401 7e-107 seq24928 107 2e-18 seq32886 89.7 6e-13 seq6538 89.7 6e-13 >seq3 Length=64984695 Score = 589 bits (652), Expect = 2e-163 Identities = 739/1010 (73%), Gaps = 8/1010 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 33665116 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 33665175 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| || |||| |||||| || || ||||| || || || |||| Sbjct 33665176 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 33665235 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 33665236 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 33665295 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| | ||| ||||| | | || | | ||| |||| | ||| | || || | Sbjct 33665296 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTA 33665355 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 33665356 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 33665415 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || |||||||| ||||||||||| ||||||| | || || | Sbjct 33665416 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 33665475 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 33665476 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 33665535 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | | || || | ||||| | ||| || || |||||||||||||| |||| Sbjct 33665536 GAATAGCGCATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGT 33665595 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| || ||||| | ||||| | ||||||||| || || | || | Sbjct 33665596 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 33665655 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| |||||||| || || || || ||||||||| || Sbjct 33665656 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGAAAGACAGAAA 33665715 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || ||||||||||| || || ||||| || || || | | || ||| Sbjct 33665716 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGAT 33665774 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||| ||||| |||| |||||||| |||||| | || Sbjct 33665775 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCACCGTGGTGAGCA 33665834 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| ||| || || || | ||| ||| || ||||| || || | |||||| Sbjct 33665835 ACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 33665894 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | |||||| | | | || |||||| || || || || || || Sbjct 33665895 CCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTT 33665954 Query 67425 AGAAAATTAGCACCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 | |||||| ||| || | || ||||| || | ||| ||||| ||||| || Sbjct 33665955 AAAAAATTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTT 33666011 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| || ||||| || | ||| || || | || | ||| ||| ||||| || | | Sbjct 33666012 ACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACAAGGAAAGAGCAAT 33666071 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || ||||||||||| ||||| || ||||| || | | ||||||||| Sbjct 33666072 AGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATC 33666121 >seq5 Length=46902585 Score = 401 bits (444), Expect = 7e-107 Identities = 437/580 (75%), Gaps = 0/580 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 22001373 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 22001314 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| || |||| |||||| || || ||||| || || || |||| Sbjct 22001313 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 22001254 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 22001253 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 22001194 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| | ||| ||||| | | || | | ||| |||| | ||| | || || | Sbjct 22001193 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTA 22001134 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 22001133 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 22001074 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || |||||||| ||||||||||| ||||||| | || || | Sbjct 22001073 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 22001014 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 22001013 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 22000954 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| | | || || | ||||| | ||| || || |||||||||||||| |||| Sbjct 22000953 GAATAGCACATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGT 22000894 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| || ||||| | ||||| | ||||||||| || || | || | Sbjct 22000893 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 22000834 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGG 67165 | ||| || || || ||||||| |||||||| || || Sbjct 22000833 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGG 22000794 >seq24928 Length=265 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 35822 TGGAGAATAGGAGACTCGAACTCCTGACCCCCTGCGTGCAAAGCAGGTGCTCTACCAACT 35881 |||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 100 TGGAGACTAGGAGAGTCGAACTCCTGACCTCCTGCGTGCAAAGCAGGCGCTCTACCAACT 41 Query 35882 GAGCTAATTCCCCA 35895 |||||| |||||| Sbjct 40 AAGCTAAGTCCCCA 27 >seq32886 Length=360271 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| |||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 126051 CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGCTCTACCACTG 125992 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 125991 AGCTACTGAGGA 125980 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| |||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 296083 CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGCTCTACCACTG 296024 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 296023 AGCTACTGAGGA 296012 >seq6538 Length=695 Score = 89.7 bits (98), Expect = 6e-13 Identities = 200/299 (67%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 67296 TGGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGA 67355 || || || |||||| ||| || || || | ||| ||| || ||| ||||| || Sbjct 695 TGAAGAGCAACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTGAAGTCCCCTTGT 636 Query 67356 GACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACA 67415 | ||||||||||| |||| | | | |||| | | | | |||||| || || || Sbjct 635 GCTTCAGGACCCCACAGTAACAACAAAAAATGCGCTAAACTTTTAGCAGGAGTAGAAACT 576 Query 67416 GCCGCTGTGAGAAAATTAGCACCCTCAAGATA---ACTAGACGCGAGTCCGTGAGTGTAC 67472 || || || | |||||| ||| || | ||| ||||| | | ||| ||||| ||| Sbjct 575 GCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTAGCC---AATCCATGAGTATAC 519 Query 67473 CAGCTTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGA 67532 || || ||||| || ||||| || | ||| || || | || || ||| ||| Sbjct 518 CATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGGAATTGGCACAAGGA 459 Query 67533 AAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || || | ||| ||||||||||| ||||| || ||||| || | | ||||||||| Sbjct 458 AAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATC 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571819242737520