Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 3e-13 seq1 87.8 3e-12 seq9 86.0 1e-11 >seq3 Length=64984695 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || |||| || | |||| ||| || || || ||||| Sbjct 16418964 ATGCCACCACGCAGACGCAGCACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCA 16419023 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||| || | | || || | || ||||||||||| || |||||||| || || ||| Sbjct 16419024 GCTAAGGTACGACCGTCTTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGA 16419083 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || |||| ||| | || || || ||||| |||| Sbjct 16419084 GGAATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCA 16419143 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || || || | || || ||||| || ||||| Sbjct 16419144 ACCTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 16419193 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| | || | | ||| || | || ||||||||||| || | | | Sbjct 59730595 ATGTTGTAGTCGGCAAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGACGC 59730536 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || ||||| || ||||| || ||||| || |||| || | || ||| || Sbjct 59730535 TGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTG 59730476 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 |||||| ||| || |||||||| || || || || || || || || ||||| || ||| Sbjct 59730475 TCGGAACTCTCGACCTCTAGAGTAATCGTCTTTCCCGTCAGTGTCTTGACAAAGATCTGC 59730416 Query 193359 AT 193360 || Sbjct 59730415 AT 59730414 >seq1 Length=43764888 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| ||||| || || ||||| || || || || || || ||||| ||||| || Sbjct 35466928 TGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATC 35466869 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| |||||| ||||| ||||| || | ||| || || || || Sbjct 35466868 TTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTGATCGTCTTTCCC 35466809 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||| || || ||||||||||| Sbjct 35466808 GTCAACGTCTTAACGAATATTTGCAT 35466783 >seq9 Length=54679868 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || ||| ||| || | ||||| || || || || | ||||||||| || ||||| Sbjct 53991897 AAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 53991838 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| || || || || || | || | ||| || || || || ||||||| Sbjct 53991837 ATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCTATCGTGTCTGAGCTCTCAACT 53991778 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | |||||||| || ||||| | || || |||||||||||||| Sbjct 53991777 TCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 53991731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899284574567520