Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9 104 5e-17 seq4 95.1 2e-14 seq8 91.5 3e-13 seq1 87.8 4e-12 >seq9 Length=54679868 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | || | ||| | |||||| |||||| || ||| Sbjct 53991504 ATACCACCTCTTAGACGAAGCACAAGGTGGAGAGTCGACTCTTTCTGGATATTGTAGTCA 53991445 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| ||| |||| |||| || |||||||||||||| | ||||| || || || Sbjct 53991444 GCGAGTGTGCGTCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCCGGA 53991385 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | ||||| || Sbjct 53991384 GGAATACCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCTGAGCTCTCA 53991325 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || || || || | ||| |||||||| Sbjct 53991324 ACCTCGAGGGTGATGGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 53991275 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || | || | ||| | ||| || ||| || ||||||| Sbjct 53991957 CCACCACGAAGACGCAGCACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 53991898 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || | |||| || | ||||||||||| ||||| | ||||||||| || || || Sbjct 53991897 AAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 53991838 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || ||| || ||||| ||| | ||||| || ||| Sbjct 53991837 ATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCTATCGTGTCTGAGCTCTCAACT 53991778 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | || || || || || || || || || | |||||| |||||| Sbjct 53991777 TCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCATT 53991730 >seq4 Length=53719093 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || | ||| | |||| ||| || ||| || ||||| | Sbjct 7247417 CCACCACGAAGACGAAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCA 7247476 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| || | ||||| ||||| ||||| | |||||| || || ||||| Sbjct 7247477 AGAGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 7247536 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || || || ||||| ||| | ||||| ||| || Sbjct 7247537 ATCCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATTGTGTCTGAGCTTTCAACC 7247596 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | |||||||||||| || || | || || | ||| |||||||| Sbjct 7247597 TCCAAAGTAATGGTTTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 7247643 >seq8 Length=41758685 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| ||||| | | || || || | ||| | |||||| || || || |||| | Sbjct 10683472 CCACCCCTAAGCCTCAGAACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCT 10683413 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | |||||| ||||||||||| | |||||||||||||||||| Sbjct 10683412 AGCGTTCGACCATCCTCAAGTTGTTTCCCAGCAAAGATGAGCCTCTGTTGATCAGGTGGT 10683353 Query 192430 ATTCCTTCTTTATCTTGT 192447 || || ||||| || ||| Sbjct 10683352 ATCCCCTCTTTGTCCTGT 10683335 >seq1 Length=43764888 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || || || | ||||| || || ||| || ||||| | || || || Sbjct 35467000 AGACGCAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGA 35466941 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | || || ||||||||||| || ||||| || || ||||| || || ||| Sbjct 35466940 CCATCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCT 35466881 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| || || ||| ||||| |||| || || ||| || || | ||| Sbjct 35466880 TTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTG 35466821 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || |||| ||||| ||||| Sbjct 35466820 ATCGTCTTTCCCGTCAACGTCTTAACGAATATTTGCAT 35466783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984065187506100