Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3728 107 6e-18 seq7104 96.9 1e-14 seq4 96.9 1e-14 seq1 89.7 2e-12 seq5 84.2 6e-11 >seq3728 Length=943 Score = 107 bits (118), Expect = 6e-18 Identities = 271/407 (67%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| || ||||| |||||||| || || || || || || | ||| || ||| || Sbjct 397 AAACCCGTCCATTTCAGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCTCC 456 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | || ||| || | ||| || | |||||||||||||| || |||||||| | Sbjct 457 TCCTAAA----CCGGTTCCC--CTTATTCTCCCAACAGCATCAATCTCATCAATGAACAC 510 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | ||| || || || | || | || || ||||| || | |||||||| | Sbjct 511 TAAACAGGGTGAGTTAGCCTTTGCCTTGTGGAACAAGTCTCTAACCCTAGATGCTCCTAC 570 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTC 289178 ||||||| |||| |||| || || ||| |||| | | | || | || ||||| Sbjct 571 ACCAACAAACATCTCTATGAACTCCGAACCGGACAGTGAGAAAAACGGAACTCCAGCTTC 630 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || |||| ||| | ||||| || ||||| || ||||| || ||||| || | || Sbjct 631 TCCGGCTATGGCCTTGGCCAGGAGAGTCTTTCCGGTTCCCGGCGGTCCTGTCAACAAGAC 690 Query 289239 TCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAAATTCT 289296 || ||||| | ||| || |||| || || | |||||||||| | || || |||||| Sbjct 691 ACCTTTTGGGATTTTAGCACCCA--AGGCTGAGAATTTCTCAGGTGTTTTCAAGAATTCT 748 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || || || || | || | || || || || |||||| || || Sbjct 749 ACTATCTCTTCGAAGTCTTGCTTGGCTTCGTCTACTCCTGCAACGTC 795 >seq7104 Length=662 Score = 96.9 bits (106), Expect = 1e-14 Identities = 118/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 233259 TTAAAAATGTTGT-AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317 || |||| |||| |||||| || |||||||| ||||||||||||||||| |||| |||| Sbjct 624 TTCAAAAAGTTGGCAGCACCATGTGCAATCATGCAATCACGTTCCATTTCTCCAAAACGC 565 Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377 |||||||||||| || | || | ||| ||| | ||||| | | ||||| Sbjct 564 AGACCACCATCACGGGATCGCCCTTCAGCTGGTTGCCTTGTTAAGATTTGTACAGGACCT 505 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCA 233417 | ||||| | | ||| || || | |||||||||||||| Sbjct 504 CGTCCACGAGAGTGAATCTTGTCATCAACCATATGCTTCA 465 >seq4 Length=53719093 Score = 96.9 bits (106), Expect = 1e-14 Identities = 118/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 233259 TTAAAAATGTTGT-AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317 || |||| |||| |||||| || |||||||| ||||||||||||||||| |||| |||| Sbjct 1166024 TTCAAAAAGTTGGCAGCACCATGTGCAATCATGCAATCACGTTCCATTTCTCCAAAACGC 1166083 Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377 |||||||||||| || | || | ||| ||| | ||||| | | ||||| Sbjct 1166084 AGACCACCATCACGGGATCGCCCTTCAGCTGGTTGCCTTGTTAAGATTTGTACAGGACCT 1166143 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCA 233417 | ||||| | | ||| || || | |||||||||||||| Sbjct 1166144 CGTCCACGAGAGTGAATCTTGTCATCAACCATATGCTTCA 1166183 >seq1 Length=43764888 Score = 89.7 bits (98), Expect = 2e-12 Identities = 226/341 (66%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || ||| ||||| || |||||| || ||||| ||||| || || | | Sbjct 1843132 TTTCTCACCGTCCCGTCATATTTAACCATAATATCCTCCATGGCCTTGACCAACCGCCTC 1843073 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || || || ||||| ||||| || ||||| ||||| || ||||| | | || ||| Sbjct 1843072 TGGATGTATCCAGTCTCTGATGTCTTCACAGCGGTATCGATAAGACCTTCCCTTCCTCCC 1843013 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 || || ||||| || | ||| | || | ||| | | | || |||| ||||| Sbjct 1843012 ATTGCGTGGAAAAAGAACTCCTGGGGAGTCAACCCACGCAGGTACGAATTCTCCACGAAC 1842953 Query 302719 CCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775 ||||| ||| || || |||| || ||||| || || |||| |||| || Sbjct 1842952 CCACGGCTCTCTGGACCGTAATCATCT---TTGGTGAAATGAGGCAACGTCCGCCCTTCG 1842896 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || | ||||| || || || || ||||||||||| || | ||||| ||||||| Sbjct 1842895 AAACCAAACGGGATCCGTTTCCCTTCCACGTTCTGCTGACCAACGCACGCTGTCATCTGA 1842836 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || || || | ||| || ||||| || || | ||||| Sbjct 1842835 GAGATGTTAATGAAACTTCCTTTGGATCCTGCTGTCACCAT 1842795 >seq5 Length=46902585 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 408943 AGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGA 409002 ||||| || ||||||||||||||| || |||||||||||||||| |||| |||||||| Sbjct 39567538 AGTTCCCGTAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGA 39567597 Query 409003 GTCCCACATAGAACATTTT 409021 | ||| | ||||||||| Sbjct 39567598 GCCCCGCCGGGAACATTTT 39567616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471197446894582