Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq3 502 3e-137 seq5 316 2e-81 seq4 138 1e-27 seq9 132 5e-26 seq8 102 9e-17 seq6538 96.9 4e-15 >seq3 Length=64984695 Score = 502 bits (556), Expect = 3e-137 Identities = 717/1007 (71%), Gaps = 2/1007 (0%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || ||||| |||||||| || |||||||| ||| | || || Sbjct 33666121 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 33666062 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 33666061 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 33666002 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || || || || | |||||||||||| | || ||| || ||| | || || || || Sbjct 33666001 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 33665942 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || |||||| | | | | |||||| | | |||| ||||||||||| | || Sbjct 33665941 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 33665882 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 || |||| || ||||| ||| | || || | ||| |||||| || | ||||||| Sbjct 33665881 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACGGT 33665822 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTAT 159664 || ||||| |||| ||||| ||| | ||||| |||||||| || || ||| | | | Sbjct 33665821 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 33665763 Query 159665 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724 || ||||| ||||| || || ||||||||||| |||||||||||||| ||||| || Sbjct 33665762 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCT 33665703 Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784 || || ||| | ||||| || ||||||| || || || ||||| || || || || Sbjct 33665702 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 33665643 Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844 ||| ||||| | | || | ||||| ||||| || ||||| || || || || ||||| Sbjct 33665642 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 33665583 Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904 ||||||||| |||||| |||| || | || || | | || || ||||| | |||||| Sbjct 33665582 GATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGT 33665523 Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964 ||| || || | | ||||||||| || |||||||| || || ||| | |||| Sbjct 33665522 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 33665463 Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024 ||||| || || ||||| || |||||||| || |||||||| ||||| || ||||| || Sbjct 33665462 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 33665403 Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084 |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | || Sbjct 33665402 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 33665343 Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTT 160144 | | |||| || |||| | | || || ||| | || || ||||| || || || Sbjct 33665342 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 33665283 Query 160145 CGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 160204 ||| || || ||| | ||||| |||||||| ||||||||||| ||||| || ||||| Sbjct 33665282 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 33665223 Query 160205 CATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAA 160264 || || || |||||||| | || || ||| |||| || ||||| || |||||||| Sbjct 33665222 TATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 33665163 Query 160265 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 33665162 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33665116 >seq5 Length=46902585 Score = 316 bits (350), Expect = 2e-81 Identities = 418/580 (72%), Gaps = 0/580 (0%) Strand=Plus/Plus Query 159732 CCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGA 159791 ||| | ||||| || ||||||| || || || ||||| || || || || ||| || Sbjct 22000794 CCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 22000853 Query 159792 TTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGA 159851 ||| | | || | ||||| ||||| || ||||| || || || || |||||||||||| Sbjct 22000854 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGA 22000913 Query 159852 GTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAAC 159911 || |||||| |||| || | || || | |||| || ||||| | ||||||||| || Sbjct 22000914 GTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAAT 22000973 Query 159912 ACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAG 159971 || | | ||||||||| || |||||||| || || ||| | ||||||||| Sbjct 22000974 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 22001033 Query 159972 GAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160031 || || ||||| || |||||||| || |||||||| ||||| || ||||| || |||| Sbjct 22001034 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCT 22001093 Query 160032 TTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 160091 ||||| || || || ||| | |||||||| ||||| ||||| || || | ||| | ||| Sbjct 22001094 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 22001153 Query 160092 ACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGT 160151 | || |||| | | || || ||| | || || ||||| || || ||||| Sbjct 22001154 ATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCC 22001213 Query 160152 CAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTA 160211 || || ||| | ||||| |||||||| ||||||||||| ||||| || ||||| || || Sbjct 22001214 CAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTT 22001273 Query 160212 TTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATC 160271 || |||||||| | || || ||| |||| || ||||| || ||||||||| |||| Sbjct 22001274 TTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATA 22001333 Query 160272 TTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 ||||| || || || | || | || ||||| ||||||| Sbjct 22001334 TTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 22001373 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/215 (70%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 158749 ATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGG 158808 |||| | || ||||| || || || | ||| | ||| | ||||| || ||||| || Sbjct 4493158 ATACGTCCTCGACGCGGCGGA-GAGTCCGGAATGGATTTGCCGTACTCATGCCGTGCGGG 4493216 Query 158809 TGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTC 158868 |||||||| || ||||||||||| || ||||| | ||||| ||| || || Sbjct 4493217 AGCTTGCTCGAGCTGCGCAGGTAAAATAGTGTCTGGCTCCGTTGACCAGTCGGACCAAAG 4493276 Query 158869 GTTCTTAGACGATGATCAGATTGCAGC--AGGATTTGTTCTTACGTGTGTAGCATATCCA 158926 ||||||||||| || ||||| |||| ||| || ||||| ||||| | || |||| Sbjct 4493277 CTTCTTAGACGACGACCAGAT--CAGCGAAGGGTTCGTTCTCACGTGCATCGCTCGTCCA 4493334 Query 158927 ACATCTGATTGTGTTGTTGTTACTGATCAAGAGGA 158961 || |||||| ||| ||| || || |||| || Sbjct 4493335 ACTTCTGATGTCGTTATTGAAACCCATAAAGAAGA 4493369 >seq4 Length=53719093 Score = 138 bits (152), Expect = 1e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| | |||||||| || || ||||| ||| | || | ||||||||| ||||||||| Sbjct 20464591 TACGTCCTAGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 20464650 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 | ||||| |||||||||||| |||| |||||| ||||||| ||| ||| ||| Sbjct 20464651 TCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 20464710 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||| | || ||||| |||||||| | |||||| ||||| || |||| || ||||| || Sbjct 20464711 TTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 20464770 Query 158930 TCTGAT 158935 |||||| Sbjct 20464771 TCTGAT 20464776 >seq9 Length=54679868 Score = 132 bits (146), Expect = 5e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| | || ||||| || || |||||||| | || | ||||||||| ||||| ||| Sbjct 13977652 TACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 13977593 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 ||||||| |||||||||||| |||| ||||| ||||||| ||| ||| ||| Sbjct 13977592 TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTCTGTTGACCAGTCTGACCAGAGT 13977533 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||| | || ||||| |||||||| | ||| |||||||| || |||| || |||||||| Sbjct 13977532 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCAACT 13977473 Query 158930 TCTGAT 158935 |||||| Sbjct 13977472 TCTGAT 13977467 >seq8 Length=41758685 Score = 102 bits (112), Expect = 9e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 158735 TGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTAC 158794 || ||||| ||| ||| | || ||||| || || |||||||| | ||| | |||| Sbjct 19692373 TGCGAAGATGATGTCTACGTCCTCGACGCGGCGGAGGAAGCAGGTATCGATTTGCCTTAC 19692432 Query 158795 TCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGAT 158854 || || ||||| || ||||||| || ||||| ||| | || ||||| | ||||| Sbjct 19692433 TCATGCCGTGCGGGATCTTGCTCAAGCTGCGCAGGGAAAGTCGTCTCTGGCTCCGTTGAC 19692492 Query 158855 CAGAGTGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGT 158914 |||| || ||| |||||||||||||| ||||| | || | ||| || || ||| Sbjct 19692493 CAGACGGACCAGAGCTTCTTAGACGATGACCAGATGAACGAGGGGTATGTCCTCACATGT 19692552 Query 158915 GTAGCATATCCAACATCTGAT 158935 || || || ||||| |||||| Sbjct 19692553 GTGGCTTACCCAACTTCTGAT 19692573 >seq6538 Length=695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 199/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || ||||| |||||||| || |||||||| ||| | || || Sbjct 400 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 459 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||| || || | || |||||| | || || ||| | ||||| || ||| Sbjct 460 CCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 519 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || || || || | |||||||||||| | || ||| || ||| | || || || || Sbjct 520 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 579 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || |||||| | | | | |||| | | | |||| ||||||||||| | || Sbjct 580 TCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 639 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCA 159601 ||| | ||| || ||||| ||| | || || | ||| |||||| || || || Sbjct 640 GGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548148976993520