Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq3 636 2e-177 seq5 392 4e-104 seq6538 150 2e-31 seq4 116 4e-21 seq9 107 2e-18 seq24928 91.5 2e-13 seq1 86.0 7e-12 >seq3 Length=64984695 Score = 636 bits (704), Expect = 2e-177 Identities = 751/1014 (74%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||| ||||||||||| ||||||||||| Sbjct 33666133 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 33666074 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 33666073 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 33666014 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538 | || ||||||||||| || ||||| ||||||||| | || || || ||| | Sbjct 33666013 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 33665954 Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598 || || |||||||||||||| || || | | | |||||| | || | || |||||| Sbjct 33665953 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 33665894 Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658 ||||| || ||||| ||||| | ||| ||| | || || || ||||||||||| Sbjct 33665893 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 33665834 Query 152659 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 152717 || | |||||| |||||||| |||| ||||| ||| | || || |||||||| || || Sbjct 33665833 GCTCACCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33665774 Query 152718 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 152777 ||| || | | || || || ||||| || || ||||||||||| || ||||||||||| Sbjct 33665773 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 33665715 Query 152778 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 152837 | |||||||| || || || || |||||||| ||||||| || || || ||| || Sbjct 33665714 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 33665655 Query 152838 GGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAA 152897 || || || || || |||||| | ||||| | ||||| || || || ||||||||||| Sbjct 33665654 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 33665595 Query 152898 TCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCA 152957 || |||||||||||||| || || ||| | |||| | ||| || | | || ||||| Sbjct 33665594 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCA 33665535 Query 152958 TGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGC 153017 ||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| || Sbjct 33665534 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33665475 Query 153018 TTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 153077 ||| || ||||||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 33665474 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33665415 Query 153078 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 153137 || || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 33665414 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33665355 Query 153138 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 153197 ||| || | ||| | |||| | || ||||| | | ||||| ||| | || || || Sbjct 33665354 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 33665295 Query 153198 TGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 153257 ||| || || || || || || |||||| | || | |||||||| ||||||||||| || Sbjct 33665294 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 33665235 Query 153258 CTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCA 153317 |||||| || ||||| ||||| ||||||||| |||| |||||| |||| || || || Sbjct 33665234 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 33665175 Query 153318 ACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 |||||||| ||| | | |||||||| ||||| | ||||| || |||||||| Sbjct 33665174 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33665121 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 151993 AAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTT 152052 |||| ||||||||||| |||||||| ||||| ||| ||||||||| || ||||||| Sbjct 16639399 AAGACGACCAGTACATATTGGATGCGGCTGAAGAAGCAGGAGTTGACTTGCCTTACTCTT 16639458 Query 152053 GTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGA 152112 | | |||||||| |||||| | ||||| |||||||| | || || ||| || ||| Sbjct 16639459 GCAGAGCTGGTGCGTGTTCCACCTGTGCCGGTAAGATCGAGAAAGGCCAAGTAGACCAGT 16639518 Query 152113 GTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTG 152172 ||| || || | || ||||| || || || ||| | || |||| ||||| | Sbjct 16639519 CTGATGGTTCCTTTCTTGAGGATGATCACATGGACAAAGGTTATGTCTTGACTTGTGTGG 16639578 Query 152173 CATATCC 152179 | || || Sbjct 16639579 CTTACCC 16639585 >seq5 Length=46902585 Score = 392 bits (434), Expect = 4e-104 Identities = 432/575 (75%), Gaps = 0/575 (0%) Strand=Plus/Plus Query 152797 CCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGA 152856 || || |||||||| ||||||| || || || ||| || || || || || || ||| Sbjct 22000794 CCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 22000853 Query 152857 TTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGT 152916 ||| | ||||| | ||||| || || || ||||||||||| || |||||||||||||| Sbjct 22000854 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGA 22000913 Query 152917 GTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAAT 152976 || || ||| | |||| | ||| || | | ||| |||||||||| ||| ||||| ||| Sbjct 22000914 GTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAAT 22000973 Query 152977 ACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAA 153036 ||||| | | |||||||||| ||||| || ||| ||||| || ||||||| Sbjct 22000974 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 22001033 Query 153037 GAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCT 153096 ||||| || ||||| ||||| || |||||||| || ||||| || || ||||| ||||| Sbjct 22001034 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCT 22001093 Query 153097 TTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGG 153156 ||| ||||||||| ||| | |||||||||||| | |||||||| || | ||| | ||| Sbjct 22001094 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 22001153 Query 153157 ACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCT 153216 | | || ||||| | | ||||| ||| | || || ||||| || || || || || Sbjct 22001154 ATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCC 22001213 Query 153217 CAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTT 153276 || |||||| | || | |||||||| ||||||||||| |||||||| || ||||| ||| Sbjct 22001214 CAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTT 22001273 Query 153277 TTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTG 153336 || ||||||||| |||| |||||| |||| || || || |||||||| ||| | | Sbjct 22001274 TTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATA 22001333 Query 153337 TTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 |||||||| ||||| | ||||| || |||||||| Sbjct 22001334 TTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 22001368 >seq6538 Length=695 Score = 150 bits (166), Expect = 2e-31 Identities = 218/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||| ||||||||||| ||||||||||| Sbjct 388 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 447 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||| || ||| | || |||||| | || || || || || Sbjct 448 CTATTGCTCTTTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 507 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538 | || ||||||||||| || ||||| ||||||||| | || || || ||| | Sbjct 508 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 567 Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598 || || |||||||||||||| || | | | | |||| | | || | || |||||| Sbjct 568 ACCGCTGCAGTTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGT 627 Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658 ||||| || |||||||| ||| | ||| ||| | || || || ||||||||||| Sbjct 628 CCTGAAGCACAAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 687 Query 152659 GCGCTCCA 152666 || || || Sbjct 688 GCTCTTCA 695 >seq4 Length=53719093 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 ||| || | || |||||||||||| ||| | || || |||||||| ||||||||| Sbjct 20464591 TACGTCCTAGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 20464650 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 | || || ||||| ||||| ||||| ||| | ||||| ||| |||||| Sbjct 20464651 TCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 20464710 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACT 152183 ||| | |||||||||||||||| ||||||||| || || |||| || ||||| ||| Sbjct 20464711 TTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 20464770 Query 152184 TCTGATGTCACC 152195 |||||||| ||| Sbjct 20464771 TCTGATGTTACC 20464782 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053 ||| ||||||||||| |||||||| ||||| ||| |||||||| || |||||||| Sbjct 16040044 AGACGACCAGTACATATTGGATGCAGCTGAAGAAGCTGGAGTTGACTTGCCTTACTCTTG 16040103 Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAG 152113 | || ||||| |||||| | || || |||||||| | || ||| |||||| ||| | Sbjct 16040104 CAGAGCCGGTGCCTGTTCCACCTGCGCCGGTAAGATCGAGAAAGGTCAAGTTGACCAGGG 16040163 Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGC 152173 ||| || || | || ||| | || |||| ||| | || |||| ||||| || Sbjct 16040164 TGATGGTTCGTTTCTTGAGGATCATCACTTTGAGAAAGGTTATGTCTTGACTTGTGTGGC 16040223 Query 152174 ATATCC 152179 || || Sbjct 16040224 TTACCC 16040229 >seq9 Length=54679868 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 ||| || | || ||||| |||||| ||| | || || |||||||| ||||| ||| Sbjct 13977652 TACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 13977593 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 | || || ||||| ||||| ||||| |||| | ||||| ||| |||||| Sbjct 13977592 TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTCTGTTGACCAGTCTGACCAGAGT 13977533 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACT 152183 ||| | |||||||||||||||| ||| || || || || |||| || ||||||||| Sbjct 13977532 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCAACT 13977473 Query 152184 TCTGATGTCACC 152195 |||||||| ||| Sbjct 13977472 TCTGATGTTACC 13977461 >seq24928 Length=265 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 9772 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||||| |||||| |||||||||||||||||||||||| |||||| ||||| |||||| Sbjct 27 TGGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTCAGGAGTTCGAC 86 Query 9832 TCCGCTATTCTCCATCGGAG 9851 || ||| |||||| | ||| Sbjct 87 TCTCCTAGTCTCCACCAGAG 106 >seq1 Length=43764888 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105 |||||||| ||||||||| | || || ||||| || || ||||| ||| | ||| Sbjct 27930595 TACTCTTGCCGTGCTGGTTCGTGCTCAAGCTGTGCCGGCAAAGTTGTGTCTGGATCTGTT 27930654 Query 152106 GATCAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACC 152165 || ||| |||||| ||| | |||||||||||||||| ||| || || || || Sbjct 27930655 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACT 27930714 Query 152166 TGTGTTGCATATCCAACTTCTGATGTCACC 152195 |||| || ||||| || |||||||| ||| Sbjct 27930715 TGTGCGGCTTATCCTACCTCTGATGTTACC 27930744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549396463971920