Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 206 3e-47 seq7 196 6e-44 seq3 104 3e-16 seq5 98.7 1e-14 seq6 91.5 2e-12 >seq2 Length=52886895 Score = 206 bits (228), Expect = 3e-47 Identities = 227/300 (76%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||| |||||||| ||||||||||| ||||| ||||| | | |||| | || | Sbjct 45187273 CCGAGTGGATATTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGAGACCT 45187332 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || |||||||||| ||| || |||||| ||||| |||||| |||||||| Sbjct 45187333 GCACGTCGGACATGAACCGGGTGGCGAGATTCTCGAGAACGATCCCGTCGGAGGCGGCGA 45187392 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGT 869807 | || || |||||||| ||||| ||||||||||| ||||| ||| | |||||| Sbjct 45187393 AGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTCGAGATTGTTCTCCCAGT 45187452 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | ||||| | |||||| || || ||||||||||||| ||||| ||||| || | Sbjct 45187453 CGCGTGTGTCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCT 45187512 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 ||||||||||||| | ||| ||||| |||| ||||| | | || | || |||||||| Sbjct 45187513 TGTACATCTCCCAGATCTGCGGGTAGTGGATTGGGAACATGCAGAATCTGTCTGGGGTTG 45187572 Score = 136 bits (150), Expect = 5e-26 Identities = 194/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| |||||| |||| ||| || |||||||| || |||||| Sbjct 45186996 CCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCACGCTTC 45187055 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||| | |||||| || || ||||| ||||| || |||||| || || Sbjct 45187056 TTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAC 45187115 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || || |||||| || || | ||| || || |||||||||||| ||||| Sbjct 45187116 GCCACGATCCTCTCGGCGAAAGTCT-GAGATCC-----GTCGATCCACTTCATGGCCCAT 45187169 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | |||||| ||| || | || | || || || ||||| ||||| |||||| | || Sbjct 45187170 TGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCTCTCC 45187229 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 |||||||| || || || | || ||| Sbjct 45187230 TTGTTGTCCTTGATGTACGTATCTAACAAGAG 45187261 >seq7 Length=48366697 Score = 196 bits (216), Expect = 6e-44 Identities = 221/295 (75%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| || ||||||||||| ||||| ||||| | | |||| | ||||| Sbjct 33024238 GAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACTTGC 33024297 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||||||| ||| || ||||| ||||| ||||| ||||||||| Sbjct 33024298 ACGTCGGACATGAACCGCGAGGCGAGATTCTCCAAAACGATTCCGTCTGAGGCGGCGAAG 33024357 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| ||||| ||||| ||||| ||||| |||| | |||||| | Sbjct 33024358 AAGGCGAGGACGTGTTTGATGAAGTGTCGCTCTCCGTCGTTGAGATTCTCCCAGTCGCGA 33024417 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| | |||||| || || ||||||||||||| ||||| |||||||| |||||| Sbjct 33024418 TTGTCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCCTTCTTGTAC 33024477 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 |||||||| | ||| |||| |||| ||||| | | || | || |||||||| Sbjct 33024478 ATCTCCCAGATCTGCGGGTATTGGATCGGGAACATGCAGAATCTGTCTGGGGTTG 33024532 Score = 122 bits (134), Expect = 1e-21 Identities = 215/311 (69%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| || || || | | |||||| ||||| || || |||| ||||||||||||||||| Sbjct 33023652 GTAATCACCAACTCTCTTCTCGAAGAAGTTCGTTTTCCCCTGAAGCGAGATCAACTCCAT 33023711 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 ||| ||||| || | | ||| ||| || | || |||| | | ||| | Sbjct 33023712 CCAATCAAACGGATTCGCCACACCGTACACCTTCCCGTACCCAAGCGCACCCAACAGCCT 33023771 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 || || ||||||||||| ||||| | ||| ||| | |||||| || | | ||| Sbjct 33023772 ATCCGCCACAAACTCGATATACTGACTCATCAGGTCACGGTTCATCCCCACCAACGCGCA 33023831 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCT 868938 || |||| |||| ||||||||| ||||||||||||| || ||| || |||| | || Sbjct 33023832 AGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACCGCGTCGCAGACGATC-GACT 33023890 Query 868939 GGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGC 868997 | || || ||| | |||| | || | || |||| ||||||||| || |||| Sbjct 33023891 TCACGCGCTCCTCCGTGAGCTTCGTCCTCAGGAGGGTATAGATCAGGCAGGCGAAATCGC 33023950 Query 868998 AGTGCAACCCT 869008 ||||||| ||| Sbjct 33023951 AGTGCAAGCCT 33023961 >seq3 Length=64984695 Score = 104 bits (114), Expect = 3e-16 Identities = 131/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||||| |||||| |||| | || |||||||| || || ||| Sbjct 52386014 CCGTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATGAGCCCTCGTTTC 52385955 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||| | |||||| || || ||||| ||||| || ||| || ||||||| Sbjct 52385954 TTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGGCGCAGGCAAAG 52385895 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| || ||| || ||||| | ||| || || ||||||| |||||||||| Sbjct 52385894 GCGACACTCCTCTCCGCGAAGGTCT-GAGATCC-----GTCGATCCACGTCATCGCCCA 52385842 >seq5 Length=46902585 Score = 98.7 bits (108), Expect = 1e-14 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||||| |||||| |||| | || |||||||| || || ||| Sbjct 19044132 CCGTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATGAGCCCTCGTTTC 19044191 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||| | |||||| || || ||||| ||||| || ||| | ||| ||| Sbjct 19044192 TTGAGCCAGAAGATCGAGCAGAAGCTACCAGAGAAGAAGATCCCTTCGGAGCAGGCGAAG 19044251 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| | || ||| || ||||| | ||| || || ||||||| |||||||||| Sbjct 19044252 GCGACGCTCCTCTCCGCGAAGGTCT-GAGATCC-----GTCGATCCACGTCATCGCCCA 19044304 >seq6 Length=39822476 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || || || || |||||||| |||||||| ||| ||| || | ||||| || Sbjct 26562485 GCTGCTAATTATCTGAACATCAAGAACCTGCTCGACCTTACATGCCAGACAGTGGCTGAC 26562426 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||| | || || ||||| |||| |||||| ||||||||| ||| Sbjct 26562425 ATGATCAAGGGCAAGACTCCGGAAGAGATTCGCACGACCTTCAACATCAAGAACG 26562371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104440420834862