Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6 105 6e-18 seq9 98.7 8e-16 seq4 93.3 3e-14 seq3 84.2 2e-11 >seq6 Length=39822476 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34450 TGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCC 34509 ||||| |||||||| || || |||||||| |||| |||| || || | || | ||| Sbjct 11472000 TGCGCACCCAGCTCACAGCCAAAGTACTTGGTCGTGTAAGCAGCAGGTCTCCCCAAGGCC 11472059 Query 34510 TTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACC 34569 ||||||||||| |||||| || | ||||||||||||||| || | ||||||| | Sbjct 11472060 TTGGCGATTTCAACCATGTTAACAACATTAGTCTTGATGCCGTTACCTCTACCTTCGATC 11472119 Query 34570 TTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 |||| || | |||||| ||||| | ||||||||| || Sbjct 11472120 TTGGTCATCATCCTCGGCATCTTGTACCTGTAGAACGCATC 11472160 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||| ||| | || | || || || |||||||| || ||||||||||| | |||| Sbjct 38584370 TTGTCATCAAACTTGGACTGAGCTCCAAGCTCGCATCCAAAGTACTTTGTAGTGTAAGAA 38584311 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || | | | ||||||||||| ||| ||||||| ||| |||||||||||| Sbjct 38584310 GCAGGCCTCGCTAAAGCCTTGGCGATGTCGACGTTGTTGACAATGTTGGTCTTGATGCCG 38584251 Query 34552 TTGCCCTTTCCTTCG 34566 ||||| || |||||| Sbjct 38584250 TTGCCTTTGCCTTCG 38584236 >seq9 Length=54679868 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||||||||| || ||||| || ||||| || || ||| | ||| ||| || Sbjct 53991730 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 53991789 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | | || || |||||| ||||| ||||| | || ||| | Sbjct 53991790 A-GACACGATAGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACC 53991848 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| ||||| || | || ||||||||||| ||||||| || || |||| ||||||| Sbjct 53991849 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACA 53991908 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||| || || || || || | ||| | ||| | | || || || |||| Sbjct 53991909 ACATCCAGAAGGAGTCGACTCTTCACCTTGTGCTGCGTCTTCGTGGTGGAA 53991959 >seq4 Length=53719093 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG-AGCCTGA 110331 ||||| || |||||||| || || || || ||||| ||||| | || || || Sbjct 28156292 ATGCAGATCTTTGTCAAGACGTTGACTGGAAAAACTATTACATTGGAGGTGGGAGAGCTC 28156351 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| | | | | || ||| ||||| ||||| || || | || ||| || Sbjct 28156352 CGATACTATTGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCA 28156411 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | || || || ||||| || || | ||||||| ||||||| ||||| Sbjct 28156412 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAACATTGGCGGACTACAA 28156471 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||| || ||||| | ||| ||||||| | ||||| || || Sbjct 28156472 CATTCAAAAGGAGTCTACACTTCACTTGGTGTTGCGTCTGCGTGGAGG 28156519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || ||||| ||||| || || | || ||||| ||||| || Sbjct 8022755 GACAAAGAAGGTATTCCACCAGATCAGCAAAGGCTCATCTTCGCCGGTAAGCAGCTTGAA 8022696 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469 |||| |||||| |||||||||||||||| || ||||| ||||| Sbjct 8022695 GATGGCAGAACCCTGGCGGATTACAACATCCAGAAAGAGTCTAC 8022652 >seq3 Length=64984695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| |||||||| || || || || || || ||||| | || |||| || | Sbjct 34861381 ATGCAAATTTTTGTCAAGACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCA 34861322 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | | || ||| ||||| ||||| || || | || ||| || Sbjct 34861321 -GACACTATTGACAACGTGAAAGCCAAGATCCAAGACAAGGAGGGGATCCCACCGGACCA 34861263 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||| || || ||| ||||||||| || || | || || ||||| Sbjct 34861262 GCAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAGGATGGAAGGACTCTAGCTGACTACAA 34861203 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || |||||||||||| | ||| |||| ||| | || || || || Sbjct 34861202 CATCCAGAAAGAATCTACGCTTCACCTGGTCTTACGTCTACGTGGAGG 34861155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412676133860798