Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 176 7e-38 seq2 170 3e-36 seq3 98.7 2e-14 seq5 93.3 7e-13 >seq7 Length=48366697 Score = 176 bits (194), Expect = 7e-38 Identities = 233/324 (72%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || |||||| |||||| ||| | || |||||||| || |||||| Sbjct 33023959 CCTTCGTCTCGGGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 33024018 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| | ||||| || || ||||| ||||| || |||||| || ||| Sbjct 33024019 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 33024078 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||||| || |||||| ||||| | || || ||||||| |||| ||||| Sbjct 33024079 GCGACGATCCTCTCGGCGAAAGTCTGAGATCCATC------GATCCACGTCATGGCCCAT 33024132 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| ||| || | || | || || || ||||| || ||||||||| |||| Sbjct 33024133 TGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAAAGGTGGTCCCTCTCC 33024192 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| ||| ||||||| ||||| ||| ||||||||||||| || || Sbjct 33024193 TTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGCTGTACATCTCTGAGTGGATATTCTCA 33024252 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 || ||||||||||| || || ||| Sbjct 33024253 ATCGCGATCTGGAACCCGTAGAAG 33024276 Score = 161 bits (178), Expect = 2e-33 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| ||||| || || |||||| || ||| || ||||| ||||| ||| Sbjct 33024283 GCCTCGGAGACTTGCACGTCGGACATGAACCGCGAGGCGAGATTCTCCAAAACGATTCCG 33024342 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||||||||| ||||| ||||| ||||| ||||| |||| Sbjct 33024343 TCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTCTCCGTCGTTGAGA 33024402 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| | |||| | ||||||||| || ||||||||||| || ||||| Sbjct 33024403 TTCTCCCAGTCGCGATTGTCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAAGAGGCT 33024462 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||| |||||||||||||| ||| | |||| |||| ||||||| Sbjct 33024463 TCGGCCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATCGGGAACA 33024511 Score = 105 bits (116), Expect = 1e-16 Identities = 202/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| ||||| || || |||| |||||||||||||||||||| ||||| || || Sbjct 33023670 CTCGAAGAAGTTCGTTTTCCCCTGAAGCGAGATCAACTCCATCCAATCAAACGGATTCGC 33023729 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 | ||| |||| || |||| |||| || ||| ||| | || || || || || | Sbjct 33023730 CACACCGTACACCTTCCCGTACCCAAGCGCACCCAA-CAGCCTATCCGCCACAAACTCGA 33023788 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103 | ||||| | ||| ||| | |||||| || | | ||| || |||| |||| | Sbjct 33023789 TATACTGACTCATCAGGTCACGGTTCATCCCCACCAACGCGCAAGGAAGCGCGTCGCACA 33023848 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGAC 794162 ||||||| ||||||||||||| || ||| || |||| | || | || || || Sbjct 33023849 CAAACTCCCTCTCGATCTCGACCGCGTCGCAGACGATC-GACTTCACGCGCTCCTCCGTG 33023907 Query 794163 GGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCA 794211 |||| ||| | || | || |||| ||||||||| || ||||| |||| Sbjct 33023908 AGCTTCGTCCTC-AGGAGGGTATAGATCAGGCAGGCGAAATCGCAGTGCA 33023956 >seq2 Length=52886895 Score = 170 bits (188), Expect = 3e-36 Identities = 233/324 (72%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||||| |||||| ||| ||| || |||||||| || |||||| Sbjct 45186996 CCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCACGCTTC 45187055 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | ||||| || || ||||| ||||| || |||||| || || Sbjct 45187056 TTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAC 45187115 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | |||| || |||||| ||||| | || || || |||||||||||| ||||| Sbjct 45187116 GCCACGATCCTCTCGGCGAAAGTCT-GAGATCC-----GTCGATCCACTTCATGGCCCAT 45187169 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| ||| || | || | || || || ||||| ||||| |||||| |||| Sbjct 45187170 TGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCTCTCC 45187229 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| ||| || || | | ||| ||| |||| |||||||| || ||| Sbjct 45187230 TTGTTGTCCTTGATGTACGTATCTAACAAGAGACTGTACATCTCCGAGTGGATATTCTCG 45187289 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 || ||||||||||| || || ||| Sbjct 45187290 ATCGCGATCTGGAACCCGTAGAAG 45187313 Score = 165 bits (182), Expect = 1e-34 Identities = 176/232 (76%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || || || || |||||| ||| ||| || ||||| ||||| ||| Sbjct 45187320 GCCTCGGAGACCTGCACGTCGGACATGAACCGGGTGGCGAGATTCTCGAGAACGATCCCG 45187379 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| ||||| ||||| ||||| ||||| ||| Sbjct 45187380 TCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTCGAGA 45187439 Query 796270 GAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | ||||| | ||||||||| || ||||||||||| |||||| Sbjct 45187440 TTGTTCTCCCAGTCGCGTGTGTCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAGGAG 45187499 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || ||||| || |||||||||||||| ||| | ||||| |||| ||||||| Sbjct 45187500 GCTTCGGCTTTCTTGTACATCTCCCAGATCTGCGGGTAGTGGATTGGGAACA 45187551 Score = 100 bits (110), Expect = 5e-15 Identities = 204/295 (69%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| || || || || |||| |||||||||||||||||||| ||||| || || Sbjct 45186707 CTCGAAGAAATTCGTTTTCCCCTGAAGCGAGATCAACTCCATCCAATCAAACGGATTCGC 45186766 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 | ||| |||| || |||| |||| || ||| || | || || ||||| |||| Sbjct 45186767 CACACCGTACACCTTCCCGTACCCAAGCGCACCCAA-CAACCTATCCGCCACGAACTCAA 45186825 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103 | ||||| | ||| | | | |||||| || | | ||| || |||| |||| || Sbjct 45186826 TATACTGACTCATCAAGTCCCGGTTCATCCCCACCAACGCGCAAGGAAGCGCGTCGCAGA 45186885 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGAC 794162 ||||||| |||||||||| || || ||| | |||| | || | || || ||| Sbjct 45186886 CAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATC-GACTTCACGCGCTCTTCCGAT 45186944 Query 794163 GGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 |||| ||| | || | || |||| |||||| || |||||||| || || ||| Sbjct 45186945 AGCTTCGTCCTCAAG-AGGGTATAGATCAGGCACGCGAAGTCGCAGTGAAGGCCT 45186998 >seq3 Length=64984695 Score = 98.7 bits (108), Expect = 2e-14 Identities = 131/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| |||||| |||||| ||| | || |||||||| || || ||| Sbjct 52386014 CCGTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATGAGCCCTCGTTTC 52385955 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | ||||| || || ||||| ||||| || ||| || ||||||| Sbjct 52385954 TTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGGCGCAGGCAAAG 52385895 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| || ||| || || || | || || || ||||||| ||||||||||| Sbjct 52385894 GCGACACTCCTCTCCGCGAAGGTCT-GAGATCC-----GTCGATCCACGTCATCGCCCAC 52385841 Query 794521 T 794521 | Sbjct 52385840 T 52385840 >seq5 Length=46902585 Score = 93.3 bits (102), Expect = 7e-13 Identities = 130/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| |||||| |||||| ||| | || |||||||| || || ||| Sbjct 19044132 CCGTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATGAGCCCTCGTTTC 19044191 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | ||||| || || ||||| ||||| || ||| | ||| ||| Sbjct 19044192 TTGAGCCAGAAGATCGAGCAGAAGCTACCAGAGAAGAAGATCCCTTCGGAGCAGGCGAAG 19044251 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||||| || ||| || || || | || || || ||||||| ||||||||||| Sbjct 19044252 GCGACGCTCCTCTCCGCGAAGGTCT-GAGATCC-----GTCGATCCACGTCATCGCCCAC 19044305 Query 794521 T 794521 | Sbjct 19044306 T 19044306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912748166186954