Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4 118 8e-22 seq3 113 4e-20 seq9 89.7 4e-13 seq1 87.8 1e-12 seq7 84.2 2e-11 seq6 84.2 2e-11 >seq4 Length=53719093 Score = 118 bits (130), Expect = 8e-22 Identities = 166/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG-AG-GCTG 107613 ||||| || |||||||| || || || || ||||| ||||| | || || || ||| Sbjct 28156292 ATGCAGATCTTTGTCAAGACGTTGACTGGAAAAACTATTACATTGGAGGTGGGAGAGCTC 28156351 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||||| | | | | || ||| |||||| || || || || | || ||| | Sbjct 28156352 -CGATACTATTGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCGGACC 28156410 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | || | || || || ||||| || |||| || |||| |||||||||||| Sbjct 28156411 AGCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAACATTGGCGGACTACA 28156470 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||||||| | ||| |||||||| | |||| || || Sbjct 28156471 ACATTCAAAAGGAGTCTACACTTCACTTGGTGTTGCGTCTGCGTGGAGG 28156519 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || |||||| |||| ||||| |||||||| |||| ||| ||| Sbjct 7247871 ATGCAAATTTTCGTGAAAACTCTAACCGGCAAGACCATTACTCTCGAGGTCGAGAGCT-C 7247813 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || ||||| || || |||||| | || ||| || Sbjct 7247812 CGACACTATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCA 7247753 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || ||||| ||||| ||||| | || | || |||||||| Sbjct 7247752 GCAGAGGCTCATCTTCGCCGGTAAGCAGCTTGAGGATGGGCGCACGCTCGCTGACTACAA 7247693 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || ||||||||| | ||| | ||| Sbjct 7247692 TATTCAGAAAGAGTCTACGCTCCACCTCGTG 7247662 >seq3 Length=64984695 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || || || |||||| | || || || ||||| ||| |||| ||| Sbjct 11142021 TTTCAGATGCAGATCTTCGTGAAAACTCTCACCGGGAAGACCATCACCCTCGAGGTGGAA 11141962 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| || || ||| | | || ||| |||||| || || |||||| | || Sbjct 11141961 AGCTCT-GACACCATCGACAACGTTAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCC 11141903 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||||| ||||| | ||| || || ||| |||| |||| | ||| |||| || Sbjct 11141902 GGATCAGCAGAGGCTTATCTTTGCTGGAAAGCAGTTGGAAGACGGGAGAACCTTGGCTGA 11141843 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||| || |||||||||||| | ||| |||| Sbjct 11141842 CTACAACATCCAGAAGGAGTCTACGCTTCACTTGGT 11141807 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || ||||| ||||| | || || || ||||| ||| | || || Sbjct 34862071 TTTCAGATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAA 34862012 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| || || ||| | | || ||| ||||| || || |||||| | || Sbjct 34862011 AGCTCT-GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCC 34861953 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||||| || || | || || || ||||| || |||| || || |||| || Sbjct 34861952 GGATCAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCAGGACTTTGGCCGA 34861893 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||| ||||||||||||||| | ||| |||| ||| Sbjct 34861892 CTACAACATCCAAAAGGAGTCTACGCTCCACTTGGTCTTG 34861853 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||| | || || || ||||| ||| |||| |||| ||| | Sbjct 59730186 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCG 59730245 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| ||||| ||||| |||||| | ||| ||||| Sbjct 59730246 -GACACCATCGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCGATCA 59730304 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || ||| ||||||| | || | || |||||||| Sbjct 59730305 GCAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGACGTACTCTCGCTGACTACAA 59730364 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || ||||||||||| | ||| |||||||| Sbjct 59730365 CATCCAGAAGGAGTCTACTCTCCACTTGGTGTTG 59730398 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || || || || ||||| || | || ||| ||| Sbjct 16419193 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACTTTGGAGGTTGAGAGCTC- 16419135 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| ||||| || || |||||| | || ||| || Sbjct 16419134 CGACACCATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCTCCGGACCA 16419075 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| || || ||||| || |||| || | || |||||||| Sbjct 16419074 GCAGAGATTGATCTTTGCCGGAAAGCAGCTTGAAGACGGTCGTACCTTAGCTGACTACAA 16419015 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || |||||||||||| | ||| ||||| || | |||| || || Sbjct 16419014 CATCCAGAAGGAGTCTACGCTTCACTTGGTGCTGCGTCTGCGTGGTGG 16418967 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||| | || || || ||||| ||| |||| ||| ||| Sbjct 16419421 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 16419362 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| |||||| || || ||||| | || ||||| Sbjct 16419361 -GACACCATTGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCA 16419303 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| || || || ||||| || |||| || ||| |||| |||||||| Sbjct 16419302 GCAGAGGCTCATTTTCGCCGGAAAGCAGCTTGAAGACGGCAGAACTTTGGCCGACTACAA 16419243 Query 107735 CATTCAAAAGGAGTCTACG 107753 ||| || |||||||||||| Sbjct 16419242 CATCCAGAAGGAGTCTACG 16419224 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| || || || || || || || || | || |||| ||| Sbjct 34861837 ATGCAGATTTTCGTCAAGACGTTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 34861778 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| ||||| ||||| || || | || |||||| Sbjct 34861777 -GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAGGGAATCCCACCGGATCA 34861719 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||| |||| |||| || || |||| || ||||| Sbjct 34861718 GCAGAGGCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGGACCTTGGCTGATTACAA 34861659 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||||||| | ||| |||| ||| Sbjct 34861658 TATCCAGAAGGAGTCTACGCTCCACTTGGTCTTG 34861625 >seq9 Length=54679868 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||||| |||||||| ||||| ||| |||| ||| ||| Sbjct 53991275 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACCATCACCCTCGAGGTTGAGAGCTCA 53991334 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || ||||| | || ||| || Sbjct 53991335 -GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCA 53991393 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||||||||||| | ||| | || |||||||| Sbjct 53991394 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGACGCACACTCGCTGACTACAA 53991453 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || || ||||| || | ||| | ||| Sbjct 53991454 TATCCAGAAAGAGTCGACTCTCCACCTTGTG 53991484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || ||||| |||||||| || || ||| | ||| ||| ||| Sbjct 53991730 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 53991789 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || |||||| || || ||||| | || ||| | Sbjct 53991790 A-GACACGATAGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACC 53991848 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | |||||||| || | || ||||||||||| ||||| | | || |||| || |||| Sbjct 53991849 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACA 53991908 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||| || |||||||| || | ||| | ||| || | | || || |||| Sbjct 53991909 ACATCCAGAAGGAGTCGACTCTTCACCTTGTGCTGCGTCTTCGTGGTGGAA 53991959 >seq1 Length=43764888 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 107539 TTTATAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCG 107598 |||| || | ||| | ||||| || ||||| |||||| | || || || ||||| ||| Sbjct 35466538 TTTAAAAAAAATTTCAGATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCC 35466597 Query 107599 TCGAAACGGAG-GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAA 107657 |||| ||| ||| ||||| ||| | | || || ||||| ||||| || Sbjct 35466598 TCGAGGTGGAAAGCTCT-GATACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAG 35466656 Query 107658 GGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAA 107717 || | || ||| |||||||| || || | ||| || || ||| ||||||| | | | Sbjct 35466657 GGAATCCCACCGGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGAAGA 35466716 Query 107718 ACAATGGCGGACTACAACATTCAAAAGGAGTCTAC 107752 || | |||||||||||||| || |||||||| || Sbjct 35466717 ACTCTTGCGGACTACAACATCCAGAAGGAGTCGAC 35466751 >seq7 Length=48366697 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| ||||| |||| || || || || || | || || | Sbjct 20455949 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACACTAGAGGTTGAATCA 20455890 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || |||||| || || ||||| | || ||| Sbjct 20455889 TCCGACACGATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGGATCCCACCGGAC 20455830 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | ||| || || |||||||| |||| | || | ||||||||| Sbjct 20455829 CAGCAGCGTCTGATCTTTGCCGGGAAGCAGCTGGAAGACGGGAGGACGCTCGCGGACTAC 20455770 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||| || |||||||| ||| | ||| ||||| | | || |||| ||| Sbjct 20455769 AACATCCAGAAGGAGTCGACGCTTCACTTGGTGCTCCGGCTGAGAGGAGGA 20455719 >seq6 Length=39822476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| |||| || || ||||| ||| |||| ||| | Sbjct 23704184 AAGATGCAGATCTTCGTTAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTCGAGTCC 23704243 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || ||||| || || |||||| | || ||| Sbjct 23704244 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 23704303 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| |||| || | || || ||||||||||| |||| | || | || |||||| Sbjct 23704304 CAGCAGCGACTGATCTTCGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTAC 23704363 Query 107733 AACATTCAAAAGGAGTCTACG 107753 ||||| || |||||||| ||| Sbjct 23704364 AACATCCAGAAGGAGTCGACG 23704384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398716930926454