Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq3 560 1e-154 seq5 365 5e-96 seq4 127 2e-24 seq9 118 1e-21 seq1 118 1e-21 seq6538 114 2e-20 >seq3 Length=64984695 Score = 560 bits (620), Expect = 1e-154 Identities = 728/1004 (73%), Gaps = 2/1004 (0%) Strand=Plus/Minus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 33666123 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 33666064 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 33666063 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 33666004 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 179128 |||| || ||||| | |||||||||||| | |||||| || ||| | || || || | Sbjct 33666003 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 33665944 Query 179129 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179188 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 33665943 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 33665884 Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 179248 | || |||| || ||||| ||| | || || || ||| ||| || |||| ||||| Sbjct 33665883 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACG 33665824 Query 179249 GTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 179307 |||| ||||| |||| || || ||| | ||||| |||||||| || || ||| || | Sbjct 33665823 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 33665764 Query 179308 ATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTT 179367 | || ||||| ||||| || || || ||||||| ||||| || || ||| ||| ||| Sbjct 33665763 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 33665705 Query 179368 CTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCG 179427 || || || ||||| || ||||| |||||||||||||||| |||||||| ||||| Sbjct 33665704 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 33665645 Query 179428 ATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCAC 179487 || ||| ||||| | || || || ||||| || || || |||||| | ||||| ||||| Sbjct 33665644 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 33665585 Query 179488 ATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACT 179547 ||||||||||| || ||| | ||||| | |||||| | | ||||||||||| | ||| Sbjct 33665584 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 33665525 Query 179548 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCT 179607 ||||| ||||| || | ||||||||| || ||||| ||||| || || || | Sbjct 33665524 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 33665465 Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667 || |||| || || || ||||| ||||| || || ||||| |||||||| || ||||| Sbjct 33665464 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 33665405 Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727 |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || | Sbjct 33665404 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 33665345 Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787 ||| | ||| | | || |||| | | || |||||| | || || ||||| ||||| Sbjct 33665344 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 33665285 Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847 || || || || ||| | ||||| |||||||| || || ||||| |||||||| || Sbjct 33665284 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 33665225 Query 179848 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAA 179907 || |||||| | || ||||| | || |||||| |||| || ||||| || |||||| Sbjct 33665224 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 33665165 Query 179908 AACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||| | || ||||| || || || ||||| |||| ||||| || Sbjct 33665164 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33665121 >seq5 Length=46902585 Score = 365 bits (404), Expect = 5e-96 Identities = 426/575 (74%), Gaps = 0/575 (0%) Strand=Plus/Plus Query 179377 CCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGA 179436 ||||| || ||||| |||||||||||||||| |||||||| ||||| || ||| || Sbjct 22000794 CCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 22000853 Query 179437 TTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGA 179496 ||| | || || || ||||| || || || |||||| | ||||| ||||| ||||||||| Sbjct 22000854 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGA 22000913 Query 179497 GTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAAT 179556 || || ||| | ||||| | |||||| | | |||||||||||| | |||||||| ||| Sbjct 22000914 GTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAAT 22000973 Query 179557 ACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAG 179616 || || | ||||||||| || ||||| ||||| || || || | || |||| Sbjct 22000974 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 22001033 Query 179617 GAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCG 179676 || || || ||||| ||||| || || ||||| |||||||| || ||||| |||||| | Sbjct 22001034 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCT 22001093 Query 179677 TTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGG 179736 ||| |||||| |||||||| || ||||||| | | ||||| || || | ||| | ||| Sbjct 22001094 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 22001153 Query 179737 GTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGT 179796 | | || |||| | | || |||||| | || || ||||| ||||| || || Sbjct 22001154 ATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCC 22001213 Query 179797 CAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTT 179856 || || ||| | ||||| |||||||| || || ||||| |||||||| || || |||||| Sbjct 22001214 CAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTT 22001273 Query 179857 CTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATC 179916 | || ||||| | || |||||| |||| || ||||| || ||||||||| | || Sbjct 22001274 TTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATA 22001333 Query 179917 TTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||||| || || || ||||| |||| ||||| || Sbjct 22001334 TTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 22001368 >seq4 Length=53719093 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || |||||||| ||||| || || || | || ||||| || ||||||||| Sbjct 20464591 TACGTCCTAGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 20464650 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| |||||| | || ||| |||| || |||||||||||| | Sbjct 20464651 TCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 20464710 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| | |||||| | | ||||| | || || || || Sbjct 20464711 TTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 20464770 Query 138718 TCCGATTGTATAATTGAAAC 138737 || ||| || ||||| || Sbjct 20464771 TCTGATGTTACCATTGAGAC 20464790 >seq9 Length=54679868 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || ||||| || |||||||| || || | || ||||| || ||||| ||| Sbjct 13977652 TACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 13977593 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| |||||| | || || |||| || |||||||||||| | Sbjct 13977592 TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTCTGTTGACCAGTCTGACCAGAGT 13977533 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| | ||| ||| | | ||||| | || || || || Sbjct 13977532 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCAACT 13977473 Query 138718 TCCGATTGTATAATTGAAAC 138737 || ||| || ||||| || Sbjct 13977472 TCTGATGTTACCATTGAGAC 13977453 >seq1 Length=43764888 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || ||||| || ||||| || || || | || ||||| || ||||||||| Sbjct 27930553 TACGTCCTCGACGCTGCGGAAGAAGCCGGGATCGACTTGCCTTACTCTTGCCGTGCTGGT 27930612 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| || ||| | || ||| |||| || |||||||||||| | Sbjct 27930613 TCGTGCTCAAGCTGTGCCGGCAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 27930672 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| | ||| ||| | | ||||| | || || || || Sbjct 27930673 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCTACC 27930732 Query 138718 TCCGATTGTATAATTGAAAC 138737 || ||| || ||||| || Sbjct 27930733 TCTGATGTTACCATTGAGAC 27930752 >seq6538 Length=695 Score = 114 bits (126), Expect = 2e-20 Identities = 204/298 (68%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 398 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 457 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| || || | || |||||| | || || ||| | ||||| || | Sbjct 458 TTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 517 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 179128 |||| || ||||| | |||||||||||| | |||||| || ||| | || || || | Sbjct 518 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 577 Query 179129 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179188 | || || |||||| | | | | |||| | | | |||| ||||||||||| | | Sbjct 578 TTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCAC 637 Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 179246 | ||| | ||| || ||||| ||| | || || || ||| ||| || ||||| || Sbjct 638 AAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605418225355760