Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq1 111 2e-19 seq6 91.5 1e-13 seq9 86.0 6e-12 >seq3 Length=64984695 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| ||||| || || || |||||||||||| || |||| || ||||| || Sbjct 34860723 TGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGC 34860782 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || |||||| |||| ||||| |||||||| ||||| |||||||| ||||| ||| || Sbjct 34860783 TTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGAATCTTG 34860842 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | || | ||||||| | || || |||| || | ||||||||||||| Sbjct 34860843 GCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTC 34860902 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 ||||| || ||||| || ||||| Sbjct 34860903 AATGTCTTAACGAAAATCTGCAT 34860925 >seq1 Length=43764888 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| |||| ||||| || || |||| |||||||| || || ||||||||||| Sbjct 35467010 GCCTCCACGTAGACGCAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCTGC 35466951 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| || ||||| || || |||||| |||||| | ||||| || || || Sbjct 35466950 CAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGG 35466891 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| || || ||| | | || | ||||| | | ||| || Sbjct 35466890 GATACCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCAAC 35466831 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||| || ||||| || || ||||||||||||||| Sbjct 35466830 CTCCAAAGTGATCGTCTTTCCCGTCAACGTCTTAACGAATATTTGCATA 35466782 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || || |||| ||||| || || || |||||||||||| || || || ||||| Sbjct 35467219 ACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCTGCCATCTTCC 35467160 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||| || |||||| |||| || | ||||| |||||||| || || || ||||| Sbjct 35467159 AATTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGG 35467100 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 ||||| ||| | | || | ||||| | || || || | || | |||||| Sbjct 35467099 ATTTTGGCTTTCACATTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTGATCGTCTTT 35467040 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || || ||||| |||||||| Sbjct 35467039 CCTGTCAAAGTCTTGACGAAGATTTGCAT 35467011 >seq6 Length=39822476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| |||| |||||| || || |||| || || || || || ||||||||||| Sbjct 26070896 GCCTCCACGTAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 26070837 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||| || |||||| || || || |||||| ||||||| | ||||| ||||| || Sbjct 26070836 CAATGTCCTGCCGTCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGG 26070777 Query 137304 TATGCCTTCTTTGTC 137318 || || || ||||| Sbjct 26070776 AATACCCTCCTTGTC 26070762 >seq9 Length=54679868 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||| || | |||| || || || || || ||||||||||| | Sbjct 53991957 CCACCACGAAGACGCAGCACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 53991898 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || || ||||||||||| |||| || | || || || ||||| Sbjct 53991897 AAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 53991838 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| || || | | || | |||||||| | || ||| Sbjct 53991837 ATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCTATCGTGTCTGAGCTCTCAACT 53991778 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||||| ||||| || || || ||||||||||| Sbjct 53991777 TCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 53991731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488343171775200