Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 seq9 100 3e-16 seq3 95.1 1e-14 seq6 89.7 5e-13 seq8 82.4 7e-11 >seq2 Length=52886895 Score = 109 bits (120), Expect = 5e-19 Identities = 341/507 (67%), Gaps = 32/507 (6%) Strand=Plus/Minus Query 46761 CCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGC-CA 46818 || ||||| ||| || |||||||| |||||||||||||||||||| || || | | | Sbjct 45187192 CCTTGCGT-CGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGA---CG-GATCTCAGA 45187138 Query 46819 CGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTT 46878 | | |||||| | || ||||| ||||| |||||||| | || || || || || | Sbjct 45187137 CTTTCGCCGAGAGGATCGTGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCT 45187078 Query 46879 TTGCCGCCATTTTTTACATTAA-AACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 | | | || || | | || || | ||| | |||||||| || || ||| ||| Sbjct 45187077 TCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGC-TCATGCCGGGGCTCACCTTCTCCAAC 45187019 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997 ||| |||||||||| |||||||| || ||| ||||| ||||| || || | | || Sbjct 45187018 GAGCTGATCTCGCGAGACGAAGGCCTTCACTGCGACTTCGCGTGCCT-GAT--CTATACC 45186962 Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCCTGA---GCATGTTTAGGGAGGCGGTG 47054 | | ||| ||| || ||||| | | ||| || | | || |||||| Sbjct 45186961 CTCTTGAGGACGAAGCTA---TCGGAAGAGCGCGTGAAGTCGATCGTGTGCGACGCGGTG 45186905 Query 47055 AGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGGCATGAACG 47112 ||||| | ||||||| | ||||| ||||| || ||| ||| |||| |||||| Sbjct 45186904 GAGATCGAGAGGGAGTTTGT--CTGCGACGCGCTTCCTTGCGCGTTGGTGGGGATGAACC 45186847 Query 47113 CACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTT-GGTGCAGCTCGGA 47171 | | ||| | | ||||||||||| ||||||||| | |||| ||||| ||| || Sbjct 45186846 GGGACTTGATGAGTCAGTATATTGAGTTCGTGGCGGATAGGTTGTTGGGTGC-GCTTGG- 45186789 Query 47172 CAACCGAAATATTTTAATGCT----CGTAATCCGTTTGAGTTTATGAACAACATTTCGCT 47227 || | || | | | | | || ||||||||||| | ||| | || ||||| Sbjct 45186788 GTACGGGAAGGTGT--ACGGTGTGGCG-AATCCGTTTGATTGGATGGAGTTGATCTCGCT 45186732 Query 47228 CGAGGGCAAAACCAATTTTTTCGAGAA 47254 |||| ||||| ||||| |||||||| Sbjct 45186731 TCAGGGGAAAACGAATTTCTTCGAGAA 45186705 >seq9 Length=54679868 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | |||||||| |||||||||||||| || |||||| | Sbjct 23042446 CGCAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTACGACCA 23042505 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || |||| |||| | |||||| || || ||||| || || || || Sbjct 23042506 TCCTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTG 23042565 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || |||| |||||| |||| || | Sbjct 23042566 TCTTGGATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGTGTGATA 23042625 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || ||||| || | ||| |||||||| Sbjct 23042626 GTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 23042660 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | |||||||| |||||||||||||| || |||||| | Sbjct 23042218 CGCAACACCAAATGAAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTACGACCA 23042277 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || || | |||| |||||||| || ||||| || || || || || Sbjct 23042278 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTG 23042337 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || | | || | || |||| ||| ||||||| || | | Sbjct 23042338 TCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACTTCGAGGGTGATC 23042397 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || ||||| || | || ||||||||| Sbjct 23042398 GTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATG 23042433 >seq3 Length=64984695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 ||||| || | | | ||||| ||||||||||||||||| ||| | ||| || ||| || Sbjct 16418757 ACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCTGCT-AAGGTGCGACCATCCTC 16418815 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| || || | |||| |||||||| || || ||||| ||||||||||| || Sbjct 16418816 AAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTG 16418875 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || |||| | || | ||| |||| |||||| || | || | || || Sbjct 16418876 GATCTTGGCCTTCACGTTATCAATAGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTT 16418935 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || | ||| ||||||||| Sbjct 16418936 GCCGGTAAGAGTCTTCACGAAGATCTGCATG 16418966 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||| ||| || ||| || ||| |||||||| || || | | Sbjct 34860732 GACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCA 34860791 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| |||||||| || || ||| || || | Sbjct 34860792 AAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACA 34860851 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||| || | ||| | ||| || || |||| || || Sbjct 34860852 TTGTCAATGGTGTCTGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTA 34860911 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 34860912 ACGAAAATCTGCAT 34860925 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || ||||||||||| || ||| || ||| ||| Sbjct 11141123 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCG 11141182 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| |||||||| || |||||||| || ||||| || || Sbjct 11141183 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGG 11141242 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || |||| |||||| || | || | || || Sbjct 11141243 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGTGTGATGGTCTTG 11141302 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || || | |||||||||||| Sbjct 11141303 CCGGTCAAGGTCTTAACGAAAATCTGCAT 11141331 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | ||||||| || || ||||||||||| || ||||| ||| ||| Sbjct 34860945 ACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCG 34861004 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||||||| || | |||| |||||||| || |||||||| |||||||| || || Sbjct 34861005 AGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTC 34861060 >seq6 Length=39822476 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || ||||| || | | | |||||||| || ||||||||||| || ||| || | Sbjct 26071111 CGTAACACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAAGGTGCGACCA 26071052 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || ||||| || || || | |||| |||||||| || || ||||| || || |||||| Sbjct 26071051 TCCTCGAGTTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCTTTA 26070992 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | |||||| | |||||| || | || | Sbjct 26070991 TCCTGAATCTTGGCCTTCACGTTGTCAATAGTATCTGAACTCTCCACCTCCAAAGTGATT 26070932 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || || |||| || || | |||||||||||| || Sbjct 26070931 GTCTTCCCGGTCAATGTCTTAACAAAAATCTGCATGCCT 26070893 >seq8 Length=41758685 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || ||||||||||| || ||||| ||||||||||||||| || | ||| Sbjct 28102507 CTTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCATCTTCGAGCTGTTTTCCAGCGAAGA 28102448 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | | ||||| ||||| ||||| || |||||||| || || || || | | | Sbjct 28102447 TCAATCGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTGT 28102388 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || |||| | ||| || |||| || | || || || ||||| ||||| | || Sbjct 28102387 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAGGGTTTTCACGA 28102328 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 28102327 AGATCTGCAT 28102318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476415277050960