Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 2e-11 >seq6 Length=39822476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 |||||| | ||||| || ||||| ||||| || | ||||| | || || || || Sbjct 26070896 CATGCAGATTTTTGTTAAGACATTGACCGGGAAGACAATCACTTTGGAGGTGGAGAGTTC 26070955 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | |||||||| || | || || || ||| |||||||||||||| || || || | Sbjct 26070956 A-GATACTATTGACAACGTGAAGGCCAAGATTCAGGATAAAGAGGGTATTCCTCCGGACC 26071014 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| | || || | || ||||| |||||||| |||| | | | | || |||| Sbjct 26071015 AGCAGCGTCTGATCTTCGCAGGCAAGCAACTCGAGGATGGTCGCACCTTGGCTGACTACA 26071074 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 | || || ||||| || ||| |||| || |||||| Sbjct 26071075 ACATCCAGAAAGAGTCGACCCTTCACTTGGTGTTA 26071109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444911432819520