Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3 129 7e-25 >seq3 Length=64984695 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||| |||||| | | || ||||| || ||||| | | || ||||| || || Sbjct 32924552 AGAGGCCTCACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGACAAAATCACCA 32924611 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || ||| | |||||| || | |||| | || || || |||||| || ||||| Sbjct 32924612 GGGACAAGTTCACACACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTA 32924671 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || |||||||| ||| |||| | ||| |||| |||||||||||||||||| Sbjct 32924672 AACGGCACACCAAGGCCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCT 32924731 Query 147100 TCGGCCACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || ||||| || ||||| ||| | ||||||||||| || |||||||| Sbjct 32924732 TCCGCCACATAGAACTGCGCA-AACATGTGGCACGGAGGAAGCGCCAT 32924778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248142670400