Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 307 2e-77 seq7 306 5e-77 seq3 102 1e-15 seq5 98.7 1e-14 seq4 98.7 1e-14 >seq2 Length=52886895 Score = 307 bits (340), Expect = 2e-77 Identities = 414/566 (73%), Gaps = 18/566 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| || ||| ||||| |||||| | |||| |||| |||||||| Sbjct 45187551 TGTTCCCAATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAG-CCGAAGCCTCCTTC 45187493 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTG-----TCGCTGA 1455867 ||||||||||| || ||||||||| | ||||| | |||||| | || | || Sbjct 45187492 TGGACCGCCGAAGAAGTCGACCTCTCCCAAGACACACGCGACTGGGAGAACAATCTC-GA 45187434 Query 1455868 GCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGC 1455927 ||||| |||||||| |||||||| |||||||||||||| || ||||||| ||| || Sbjct 45187433 -CGACGGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGG 45187376 Query 1455928 ATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGT 1455987 ||||| |||||| || ||| ||| || ||| || || || | | ||||| || Sbjct 45187375 ATCGTTCTCGAGAATCTCGCCACCCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGC 45187316 Query 1455988 TTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTG 1456047 || ||||||||||||||||| ||||| || |||||||| || | ||| ||| || Sbjct 45187315 GCCTTCTACGGGTTCCAGATCGCGATCGAGAATATCCACTCGGAGATGTACAGTCTCTTG 45187256 Query 1456048 ATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACG 1456107 | || || ||| |||||||| |||| |||||| ||||| ||||| || || || Sbjct 45187255 TTAGATACGTACATCAAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACC 45187196 Query 1456108 GTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC 1456167 | || | || ||| |||||| | ||||| |||||||||||| || || ||| Sbjct 45187195 ATCCCTTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGAC-----GGATCTC 45187141 Query 1456168 GACACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGC 1456225 | ||||| |||||| || |||| | || || ||||||| || ||||| ||||| || Sbjct 45187140 -AGACTTTCGCCGAGAGGATCGTGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGT 45187082 Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAG 1456285 || |||||| | ||||| |||||||||||||| || |||||||| || | || ||| Sbjct 45187081 AGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCGGGGC-TCACCTTCTC 45187023 Query 1456286 CAACGAATTTATCAGTCGCGACGAAG 1456311 |||||| | ||| || ||||||| Sbjct 45187022 CAACGAGCTGATCTCGCGAGACGAAG 45186997 >seq7 Length=48366697 Score = 306 bits (338), Expect = 5e-77 Identities = 409/561 (73%), Gaps = 11/561 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| || ||| ||||| |||||| || |||||||| ||||| || Sbjct 33024511 TGTTCCCGATCCAATACCCGCAGATCTGGGAGATGTAC-AAGAAGGCCGAAGCCTCTTTC 33024453 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||||||||| || ||||||||| | |||| | |||||| | || | |||| Sbjct 33024452 TGGACCGCCGAAGAAGTCGACCTCTCCCAAGACAATCGCGACTGGGAGAATCTCAACGAC 33024393 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | ||||| || |||||||| |||||||||||||| || ||||||| || || ||||| Sbjct 33024392 GGAGAGCGACACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCCTCAGACGGAATCGT 33024334 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 ||||| || ||| || || ||| || || ||| | | ||||| ||| || Sbjct 33024333 TTTGGAGAATCTCGCCTCGCGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCTT 33024274 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 ||||||||||||||||| || || || |||||||| || | ||| |||||| |||| Sbjct 33024273 CTACGGGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGA 33024214 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 ||| ||| |||||||| |||| ||||||||| || ||||| || || || | || Sbjct 33024213 CACGTACATCAAGGACAACAAGGAGAGGGACCACCTTTTCCGCGCGATTGAAACCATCCC 33024154 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | || ||| |||||| | ||||| |||| ||||||| | || ||| | || Sbjct 33024153 TTGCGTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATC-----GATGGATCTC-AGAC 33024100 Query 1456173 TTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| |||||| || |||||| ||| || ||||||| || ||||| ||||| || || || Sbjct 33024099 TTTCGCCGAGAGGATCGTCGCCTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTT 33024040 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 |||| | ||||| ||||| |||||||| || |||||||| || || ||| ||||| Sbjct 33024039 CTGCTCGATCTTCTGGCTTAAGAAGCGAGGGCTCATGCCTGG-GTTAACCTTCTCCAACG 33023981 Query 1456291 AATTTATCAGTCGCGACGAAG 1456311 | || ||| || ||||||| Sbjct 33023980 AGTTGATCTCCCGAGACGAAG 33023960 Score = 98.7 bits (108), Expect = 1e-14 Identities = 206/299 (69%), Gaps = 11/299 (4%) Strand=Plus/Minus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 ||| |||||||| || || ||||| ||| |||| || | || | |||| || || Sbjct 33023961 AGGCTTGCACTGCGATTTCGCCTGCCTGATCTATACCCTCCTGAGGACGAAGC--TC-AC 33023905 Query 1456507 CGACGTGCCC---AAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAG 1456563 || | || | ||| |||| || ||| || ||||||||||||| |||||||| | Sbjct 33023904 GGAGGAGCGCGTGAAGTCGATCGTCTGCGACGCGGTCGAGATCGAGAGGGAGTTTGTGTG 33023845 Query 1456564 CGAGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATT 1456622 ||| |||| || ||| | | || |||||| | ||| | ||| | ||||| || Sbjct 33023844 CGACGCGCTTCCTTGCGCGTTGGTGGGGATGAACCGTGACC--TGATGAGTCAGTATATC 33023787 Query 1456623 GAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGG 1456682 || ||| || || || | ||| | | ||||| || | ||| |||| ||| | || Sbjct 33023786 GAGTTT-GTGGCGGATAGGCTGTTGGGTGCGCTTGGGTACGG-GAAGGTGTACGGTGTGG 33023729 Query 1456683 CCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 | || ||||| |||||||||||||||||||| |||| || || ||||| |||||| Sbjct 33023728 CGAATCCGTTTGATTGGATGGAGTTGATCTCGCTTCAGGGGAAAACGAACTTCTTCGAG 33023670 >seq3 Length=64984695 Score = 102 bits (112), Expect = 1e-15 Identities = 132/177 (75%), Gaps = 9/177 (5%) Strand=Plus/Plus Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||||||||| ||||||| || || ||| ||| ||| || ||| || |||| | Sbjct 52385842 TGGGCGATGACGTGGATCGAC-----GGATCTCAGAC-CTTCGCGGAGAGGAGTGTCGCC 52385895 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 |||||| ||| ||| || ||||| ||||| || || |||||| | ||||| ||||||||| Sbjct 52385896 TTTGCCTGCGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAG 52385955 Query 1456253 AAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || || || |||||||| ||| || ||| |||||| || ||| ||| ||||| Sbjct 52385956 AAACGAGGGCTCATGCCTGGT-TTGACCTTCTCCAACGAGTTGATCTCTCGAGACGA 52386011 >seq5 Length=46902585 Score = 98.7 bits (108), Expect = 1e-14 Identities = 131/177 (74%), Gaps = 9/177 (5%) Strand=Plus/Minus Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||||||||| ||||||| || || ||| ||| ||| || ||| || ||||| | Sbjct 19044304 TGGGCGATGACGTGGATCGAC-----GGATCTCAGAC-CTTCGCGGAGAGGAGCGTCGCC 19044251 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 || ||| || ||| || ||||| ||||| || || |||||| | ||||| ||||||||| Sbjct 19044250 TTCGCCTGCTCCGAAGGGATCTTCTTCTCTGGTAGCTTCTGCTCGATCTTCTGGCTCAAG 19044191 Query 1456253 AAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || || || |||||||| ||| || ||| |||||| || ||| ||| ||||| Sbjct 19044190 AAACGAGGGCTCATGCCTGGT-TTGACCTTCTCCAACGAGTTGATCTCTCGAGACGA 19044135 >seq4 Length=53719093 Score = 98.7 bits (108), Expect = 1e-14 Identities = 166/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| ||||| || | | ||| ||| || | |||| || Sbjct 44767872 ATCTTCAAGGTGCTGAAGCAGGTCCACCCG-GA--CATCGGG--ATC-TCGAGCAAGGCC 44767925 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | |||||| | Sbjct 44767926 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCC--T 44767983 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || || || | | ||||||| |||||| | | ||||||||||||||||||| Sbjct 44767984 CGAAGCTCGCTAGGTACAACAAGAAGCCCACGATTACCTCCCGCGAGATCCAGACCGCCG 44768043 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | || | | | ||| || || || | ||||||||||||||| || |||| Sbjct 44768044 TGAGGCTCGTTCTCCCCGGTGAGCTCGCTAAGCACGCCGTCTCCGAAGGAACCA 44768097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174639284855532