Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq3 502 3e-137 seq5 324 2e-83 seq6538 96.9 4e-15 >seq3 Length=64984695 Score = 502 bits (556), Expect = 3e-137 Identities = 719/1007 (71%), Gaps = 8/1007 (1%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 33666123 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 33666064 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 33666063 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 33666004 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 182550 |||| || || || | ||| ||||||| | |||||| || ||| | || || || | Sbjct 33666003 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 33665944 Query 182551 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 182610 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 33665943 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 33665884 Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670 | || |||| || ||||| ||| | || || || ||| ||| || |||| ||||| Sbjct 33665883 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACG 33665824 Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGA 182729 |||| ||||| | || ||||| ||| | | ||||||||||||||||| ||| || | Sbjct 33665823 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAA 33665765 Query 182730 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTC 182789 | ||||||| ||||| || || || |||||||| |||||||| || || ||| || Sbjct 33665764 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 33665705 Query 182790 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 182849 || || ||||| | || || || |||||| || ||||| |||||||| ||||| Sbjct 33665704 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 33665645 Query 182850 ATCTTCAGGTTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTC 182906 || || | ||| || || |||| |||||||| | || |||||| | ||||| || Sbjct 33665644 ATATTTCGATTCATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATTT 33665588 Query 182907 CATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTC 182966 |||||||||||||| |||||| ||||||| | || ||| | | ||||| ||||||| Sbjct 33665587 CATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCT 33665528 Query 182967 ACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGAT 183026 || ||||| ||||| || | ||||||||| || ||||| ||||| || || | Sbjct 33665527 ACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAAC 33665468 Query 183027 TCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATC 183086 | ||||| | || || || ||||| ||||| || || || || ||||||||||||||| Sbjct 33665467 CCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATC 33665408 Query 183087 TTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTC 183146 || |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || Sbjct 33665407 TTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTA 33665348 Query 183147 ATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTAT 183206 | ||| | ||| | | || |||| | | || || ||| | || || ||||| ||| Sbjct 33665347 ACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTAT 33665288 Query 183207 GATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACA 183266 || || || || || || | ||||| |||||||| || || ||||| ||||| || Sbjct 33665287 GACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACT 33665228 Query 183267 AAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACAT 183326 || || || ||| | || ||||| | || |||||| |||| || ||||| || ||| Sbjct 33665227 AAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCAT 33665168 Query 183327 GAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 |||||| | || |||||||| || |||||||| | || ||||| || Sbjct 33665167 GAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33665121 >seq5 Length=46902585 Score = 324 bits (358), Expect = 2e-83 Identities = 410/561 (73%), Gaps = 6/561 (1%) Strand=Plus/Plus Query 182816 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTC---CTGTTGTTCCT 182872 |||||| || ||||| |||||||| ||||| || || | ||| || || |||| Sbjct 22000811 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCA 22000870 Query 182873 TCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 182932 |||||||| | || |||||| | ||||| || |||||||||||||| |||||| |||| Sbjct 22000871 --AGGGTTTC-ATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACT 22000927 Query 182933 GGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGA 182992 ||| | || ||| | ||||||| ||||||| || ||||| ||||| || | |||||| Sbjct 22000928 GGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA 22000987 Query 182993 TGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTC 183052 ||| || ||||| ||||| || || | | ||||| | || || || ||||| Sbjct 22000988 TGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTC 22001047 Query 183053 GATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCG 183112 ||||| || || || || ||||||||||||||||| |||||||| ||| |||||| || Sbjct 22001048 AATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACG 22001107 Query 183113 TTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGG 183172 |||||| || ||||||||||| ||||| || || | ||| | ||| | | || |||| Sbjct 22001108 TTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGG 22001167 Query 183173 GATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGC 183232 | | || || ||| | || || ||||| ||||| || || || || || | || Sbjct 22001168 AGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGC 22001227 Query 183233 AGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACT 183292 ||| |||||||| || || ||||| ||||| || || || || ||| | || ||||| | Sbjct 22001228 AGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTAT 22001287 Query 183293 ACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGT 183352 || |||||| |||| || ||||| || ||||||||| | || |||||||| || || Sbjct 22001288 TCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 22001347 Query 183353 TCTACCTAGAGGTAACGCACT 183373 |||||| | || ||||| || Sbjct 22001348 TCTACCACGTGGAAACGCTCT 22001368 >seq6538 Length=695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 200/298 (67%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 398 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 457 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||| || || | || |||||| | || || ||| | ||||| || | Sbjct 458 TTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 517 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 182550 |||| || || || | ||| ||||||| | |||||| || ||| | || || || | Sbjct 518 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 577 Query 182551 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 182610 | || || |||||| | | | | |||| | | | |||| ||||||||||| | | Sbjct 578 TTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCAC 637 Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 182668 | ||| | ||| || ||||| ||| | || || || ||| ||| || ||||| || Sbjct 638 AAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614364946070080