Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq3 477 1e-129 seq5 298 7e-76 seq9 104 3e-17 seq6538 100 3e-16 seq4 98.7 1e-15 >seq3 Length=64984695 Score = 477 bits (528), Expect = 1e-129 Identities = 708/1001 (71%), Gaps = 2/1001 (0%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 33666123 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 33666064 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 33666063 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 33666004 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412 |||| || || || | |||||||||||| | || ||| || ||| | || || || | Sbjct 33666003 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 33665944 Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 33665943 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 33665884 Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532 | || |||| || ||||| ||| | || || || ||| ||| || |||| ||||| Sbjct 33665883 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACG 33665824 Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGT 179591 |||| ||||| | || ||||| ||| | | ||||||||||||||||| ||| | | Sbjct 33665823 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 33665764 Query 179592 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTC 179651 | ||||||| ||||| || || || |||||||| |||||||| || || ||| || Sbjct 33665763 TGC-GACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 33665705 Query 179652 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 179711 || || ||||| | || || || |||||| || ||||| |||||||| ||||| Sbjct 33665704 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 33665645 Query 179712 ATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCAT 179771 || || | ||| | || || | || || || || || ||||| | ||||| || ||| Sbjct 33665644 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 33665585 Query 179772 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACT 179831 ||||||||||| |||||| |||| || | || ||| | | ||||| ||||| | |||| Sbjct 33665584 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 33665525 Query 179832 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCG 179891 ||||| ||||| || | ||||||||| || |||||||| || || ||| | | Sbjct 33665524 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 33665465 Query 179892 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 179951 || || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| Sbjct 33665464 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 33665405 Query 179952 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180011 || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 33665404 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 33665345 Query 180012 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 180071 ||| |||||| || |||| | | ||||| ||| | ||||| ||||| || || Sbjct 33665344 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 33665285 Query 180072 TTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAG 180131 ||||| ||||| ||| | ||||| |||||||| || |||||||| ||||| || || Sbjct 33665284 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 33665225 Query 180132 AACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAG 180191 || |||||| | || ||||| | || || ||| |||| | ||||| || ||||| Sbjct 33665224 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 33665165 Query 180192 TCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 | ||||||| || || ||||| ||| | || || || Sbjct 33665164 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 33665124 >seq5 Length=46902585 Score = 298 bits (330), Expect = 7e-76 Identities = 399/555 (72%), Gaps = 0/555 (0%) Strand=Plus/Plus Query 179678 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCA 179737 |||||| || ||||| |||||||| ||||| || || | ||| | || || | || Sbjct 22000811 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCA 22000870 Query 179738 GGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 179797 || || || || ||||| | ||||| || |||||||||||||| |||||| |||| || Sbjct 22000871 AGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGG 22000930 Query 179798 AGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGG 179857 | || ||| | ||||||| ||||| | ||||||||| ||||| || | ||||||||| Sbjct 22000931 CGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGG 22000990 Query 179858 AGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTAT 179917 || |||||||| || || ||| | | || || | ||||| |||||||| || Sbjct 22000991 TGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAAT 22001050 Query 179918 GGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTG 179977 |||||| || |||||||| ||||| || ||||| || |||| ||||| || || || || Sbjct 22001051 GGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTG 22001110 Query 179978 GCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCAT 180037 | | ||||| || ||||| ||||| || || | ||| |||||| || |||| | Sbjct 22001111 GTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGT 22001170 Query 180038 TATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGC 180097 | ||||| ||| | ||||| ||||| || || ||||| ||||| ||| | ||||| Sbjct 22001171 AGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGC 22001230 Query 180098 AGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACG 180157 |||||||| || |||||||| ||||| || || || |||||| | || ||||| | || Sbjct 22001231 GGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCG 22001290 Query 180158 TGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCT 180217 || ||| |||| | ||||| || ||||| | ||||||| || || ||||| Sbjct 22001291 CGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 22001350 Query 180218 GCCAAGAGGTAATGC 180232 ||| | || || || Sbjct 22001351 ACCACGTGGAAACGC 22001365 >seq9 Length=54679868 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||| |||||||| || |||||||| | || | ||||||||| ||||| ||| ||| Sbjct 13977648 TCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTT 13977589 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || ||||| || ||| | | | |||||||||||| ||| ||| ||| ||||| Sbjct 13977588 GCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTCTGTTGACCAGTCTGACCAGAGTTTCC 13977529 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACTAGTG 176529 | |||||||| || |||| || ||| |||| ||||| | ||||||| ||| || Sbjct 13977528 TCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCAACTTCTG 13977469 Query 176530 AT 176531 || Sbjct 13977468 AT 13977467 >seq6538 Length=695 Score = 100 bits (110), Expect = 3e-16 Identities = 201/298 (67%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 398 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 457 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| || || | || |||||| | || || ||| | ||||| || | Sbjct 458 TTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 517 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412 |||| || || || | |||||||||||| | || ||| || ||| | || || || | Sbjct 518 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 577 Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472 | || || |||||| | | | | |||| | | | |||| ||||||||||| | | Sbjct 578 TTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCAC 637 Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 179530 | ||| | ||| || ||||| ||| | || || || ||| ||| || ||||| || Sbjct 638 AAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695 >seq4 Length=53719093 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||| ||||||||||| ||||| || | || | ||||||||| ||||||||| | | Sbjct 20464595 TCCTAGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCCT 20464654 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || ||||| || ||| | | | ||| |||||||| ||| ||| ||| ||||| Sbjct 20464655 GCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 20464714 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACTAGTG 176529 | |||||||| || |||| || || |||| ||||| | ||||||||||| || Sbjct 20464715 TCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTG 20464774 Query 176530 AT 176531 || Sbjct 20464775 AT 20464776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605760484603680