Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq3 477 1e-129 seq5 289 3e-73 seq6538 113 5e-20 seq4 86.0 7e-12 seq9 82.4 8e-11 >seq3 Length=64984695 Score = 477 bits (528), Expect = 1e-129 Identities = 721/1020 (71%), Gaps = 4/1020 (0%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 33666133 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 33666074 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 33666073 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 33666014 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078 | ||| |||||||| |||||| | |||||||||||| | || ||| || ||| | Sbjct 33666013 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 33665954 Query 160079 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 160137 || || ||||| ||||| ||| | | | | |||||| || || || || ||||| Sbjct 33665953 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 33665895 Query 160138 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGT 160197 |||||| || ||||| ||||| | ||| ||| | || || || ||| |||||| Sbjct 33665894 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 33665835 Query 160198 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 160257 || | ||| ||||| ||||| |||| || || ||| | ||||| |||||||| || || Sbjct 33665834 TGCTCACCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 33665775 Query 160258 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG 160316 ||| || | | || ||||| ||||| || || ||||||||||| |||||||| |||| Sbjct 33665774 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 33665716 Query 160317 TCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 160376 | || || || || || ||| | ||||| || ||||||| || || || |||| Sbjct 33665715 TTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 33665656 Query 160377 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTA 160436 | || || || || ||| ||||| | | || | ||||| ||||| || ||||| | | Sbjct 33665655 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 33665596 Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496 |||| || |||||||||||||| |||||| |||| || | || ||| | | || || | Sbjct 33665595 ACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTC 33665536 Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556 |||| | ||||||||| || || | | ||||||||| || |||||||| || | Sbjct 33665535 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 33665476 Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 33665475 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 33665416 Query 160617 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160676 | || ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 33665415 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 33665356 Query 160677 TGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 160736 | || || | ||| | |||| | |||| | | ||||| ||| | || || | Sbjct 33665355 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTAC 33665296 Query 160737 GTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160796 |||| || || ||||| || || || | ||||| |||||||| ||||||||||| | Sbjct 33665295 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 33665236 Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 160856 |||| || || || || || | || ||||| | || || ||| | || || || | Sbjct 33665235 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATC 33665176 Query 160857 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 | || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 33665175 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33665116 >seq5 Length=46902585 Score = 289 bits (320), Expect = 3e-73 Identities = 412/580 (71%), Gaps = 0/580 (0%) Strand=Plus/Plus Query 160337 CCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGA 160396 ||| | ||||| || ||||||| || || || ||||| || || || || ||| || Sbjct 22000794 CCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 22000853 Query 160397 TTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGA 160456 ||| | | || | ||||| ||||| || ||||| | ||||| || |||||||||||| Sbjct 22000854 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGA 22000913 Query 160457 GTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAAC 160516 || |||||| |||| || | || ||| | |||| || ||||| | ||||||||| || Sbjct 22000914 GTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAAT 22000973 Query 160517 ACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAA 160576 || | | ||||||||| || |||||||| || || ||| | | || || | Sbjct 22000974 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 22001033 Query 160577 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160636 ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || |||| Sbjct 22001034 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCT 22001093 Query 160637 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 160696 ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| | ||| Sbjct 22001094 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 22001153 Query 160697 ACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGT 160756 | | |||| | | ||||| ||| | || || ||||| || || ||||| Sbjct 22001154 ATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCC 22001213 Query 160757 CAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTA 160816 || || || | ||||| |||||||| ||||||||||| ||||| || || || || || Sbjct 22001214 CAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTT 22001273 Query 160817 CTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATC 160876 | || ||||| | || || ||| | || || || || || ||||| ||| |||| Sbjct 22001274 TTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATA 22001333 Query 160877 TTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 ||||| || || ||||| || | || ||||| ||||||| Sbjct 22001334 TTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 22001373 >seq6538 Length=695 Score = 113 bits (124), Expect = 5e-20 Identities = 212/309 (69%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 388 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 447 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| || ||| | || |||||| | || || ||||| || Sbjct 448 CTATTGCTCTTTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 507 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078 | ||| |||||||| |||||| | |||||||||||| | || ||| || ||| | Sbjct 508 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 567 Query 160079 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 160137 || || ||||| ||||| ||| | | | | |||| | || || || || ||||| Sbjct 568 ACCGCTGCAGTTTCTACTCCTGCTAAAAGTTTAGCGCATT-TTTTGTTGTTACTGTGGGG 626 Query 160138 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGT 160197 |||||| || |||||||| ||| | ||| ||| | || || || ||| |||||| Sbjct 627 TCCTGAAGCACAAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 686 Query 160198 GGCACTCCA 160206 || || || Sbjct 687 TGCTCTTCA 695 >seq4 Length=53719093 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 159553 TAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTA 159612 ||||||||||||||||||| || | || || || || || ||||||||| | || Sbjct 20464598 TAGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCCTGCT 20464657 Query 159613 GCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGG 159672 | ||||| ||||| ||| | || | |||||||| |||||| |||| | | Sbjct 20464658 CGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCG 20464717 Query 159673 ACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACG 159732 | ||||| || | || |||||||| |||||||||||| | || ||||| || || | Sbjct 20464718 ATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGATG 20464777 Query 159733 TAACTAT 159739 | || || Sbjct 20464778 TTACCAT 20464784 >seq9 Length=54679868 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 |||||||| ||||||||||| | || || || || || ||||| ||| |||| Sbjct 13977643 GACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGCTCG 13977584 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | ||||| ||||| ||| | || | |||||||| |||||| |||| | || Sbjct 13977583 AGCTGTGCAGGTAAAGTTGTGTCTGGTTCTGTTGACCAGTCTGACCAGAGTTTCCTCGAT 13977524 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734 ||||| || | |||||||| ||| |||||||||||| | || || || || || || Sbjct 13977523 GATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCAACTTCTGATGTT 13977464 Query 159735 ACTAT 159739 || || Sbjct 13977463 ACCAT 13977459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552246491914880