Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 122 1e-22 seq7 111 2e-19 >seq3 Length=64984695 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||| | ||| | || | |||||| |||| |||||| Sbjct 53582236 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 53582295 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| || || || || || Sbjct 53582296 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 53582355 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || |||| || | |||||| |||||| || |||||||| Sbjct 53582356 AACACCGATACCCCCAGCTGATTTACTTATAACAGCACACTCTTTCAAGGTATCATATAT 53582415 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| ||||||||||| ||||| Sbjct 53582416 TCCCTCGATGCTATCATCCTTCATG 53582440 >seq7 Length=48366697 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | || | ||||| | ||| | || | |||||| |||| ||||||| Sbjct 27689858 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATAGGAACAATACCA 27689799 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 ||||||| ||||| || ||| ||| |||||||| | || ||||| || || ||| Sbjct 27689798 TTAGATTCTCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGAATGTTGTGAACAGAA 27689739 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || || || || |||| || | ||||| |||||| || || || || Sbjct 27689738 ACACCAATACCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAACGTATCGTAAATC 27689679 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||||||||| ||||| | |||||| ||||| Sbjct 27689678 CCCTCAATGCTATCATCCTTCATGCAGATAAGAAAGCAGCT 27689638 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| | ||||| | || |||||||| |||||||||||| | ||| | | || Sbjct 27689544 AGTTCCAGAGTTAAAGAGGGTGGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 27689485 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| || | | |||||| || |||||| | |||||| || | | || | ||| | Sbjct 27689484 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACTCTCATGAG 27689425 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| |||||||| | ||| ||| ||| || | ||| || ||||||||| |||| || Sbjct 27689424 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAAAGGTATGATCTTTCAAG 27689365 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||| || || || || |||| ||| || || | |||||||| || Sbjct 27689364 AGTCTTGAAACCGAAGTAGTCATATTCGAAATCGCGGTCGTAAATGAT 27689317 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 |||||||||||||||||| | || || || |||||||| ||||| ||||| | | | || Sbjct 27691120 AAGAATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGCCTATGACGCATGTT 27691061 Query 69141 TGAACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 |||| ||| || | ||| |||||||| | ||| | ||| || || ||||| ||||| Sbjct 27691060 TGAAGTTTTAGCCGTCT-CCATAGGATAGTGATTCACATCAATTATCTTATTGAGATT 27691004 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||| ||| | ||||| || |||||| || || | | |||||||||| || || Sbjct 27691652 TAAGACTCTGCGACTATAAATGTTTGAGGTATACGGCTCAAAACATTCATTATTCCCAAG 27691593 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 ||| || ||||| ||||||||||| ||||| || || | | |||||||| |||| Sbjct 27691592 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCTACTAAAAGAGAATTTCTAATTCCATT 27691533 Query 68853 TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCA 68912 | || ||||| | ||| ||| ||||| | || || || | |||||||| Sbjct 27691532 CTTCGAAATCATATCTCTGAGAGCAGCCCAGTCCCAGCGGTCCGAAGGAATCACATTCCA 27691473 Query 68913 AAGATCGTATTGTAGAATTCC 68933 | || ||||||||| || Sbjct 27691472 CATGTCAGGTTGTAGAATACC 27691452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686626428965040