Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2 111 5e-19 >seq2 Length=52886895 Score = 111 bits (122), Expect = 5e-19 Identities = 319/479 (67%), Gaps = 24/479 (5%) Strand=Plus/Minus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 || ||| | ||| ||||| | || | |||||||| || | |||||| ||||| Sbjct 45187426 GAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTTCTC 45187367 Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 |||||||| | || || ||| | ||| || || | ||||||| ||| |||| Sbjct 45187366 GAGAATCTCGCCACCCGGTTCATGTCCGACGTGCAGGTCT---CCGAGGCGCGCGCCTTC 45187310 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| |||||| ||| || ||||| || ||| | ||| | ||||||| ||| | || Sbjct 45187309 TACGGGTTCCAGATCGCGATCGAGAATATCCACTCGGAGATGTACAGTCTCTTGTT--AG 45187252 Query 443583 ACAC-TAATTCC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCG---TTCATGACCA 443637 | || || || | || || | | | || || |||||| || || || | ||||| Sbjct 45187251 ATACGTACATCAAGGAC-AACAAGGAGAG-GGACCATCTCTTCCGCGCGATTGA-GACCA 45187195 Query 443638 CGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCA 443697 || || || | | ||| | | ||||| | ||||| |||| || ||||| Sbjct 45187194 TCCCTTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA-----TCTCA 45187140 Query 443698 GC--TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 | |||| |||| | | || || || ||| |||||||| | || || ||| || Sbjct 45187139 GACTTTCGCCGAGAGGATCGTGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAG 45187080 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 ||| || || ||||||||| | || |||||||| || |||| || || ||||| | Sbjct 45187079 CTTCTGC-TCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCA 45187021 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 |||| |||||| || ||||| || | || ||||||||||| || || |||| ||| Sbjct 45187020 ACGAGCTGATCTCGCGAGACGAAGGCCTTCACTGCGACTTCGCGTGCCTGATCTATACC 45186962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587666751648270