Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 127 3e-24 seq8 118 1e-21 seq6 111 2e-19 seq2 100 4e-16 seq7 91.5 2e-13 >seq5 Length=46902585 Score = 127 bits (140), Expect = 3e-24 Identities = 299/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | | | |||| ||||| ||||| | | || || || Sbjct 2378409 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 2378468 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | || ||| Sbjct 2378469 GCAACCACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGGTTA 2378528 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC---ACCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || ||| ||||| | | ||| | || Sbjct 2378529 AGCGTCTGTTCTCTTTCATCATTACCTCC---ACCGATACCAGTCCCTCTCTGCCTACCA 2378585 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||||||||||| ||||||||||| || || || ||| ||| || Sbjct 2378586 ACAGCATCAATCTCATCAACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAA 2378645 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || ||||| ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 2378646 AGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCGAG 2378705 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| || ||||| || | ||| || || | Sbjct 2378706 --ATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCC 2378763 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | ||||| || ||| ||||||| | ||| |||||| ||||| || Sbjct 2378764 CAGTACCGGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGA 2378823 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||| ||||| ||||| Sbjct 2378824 ACCTCTCAGGCTTCTTCAGAAACTCCAC 2378851 Score = 127 bits (140), Expect = 3e-24 Identities = 299/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | | | |||| ||||| ||||| | | || || || Sbjct 2391790 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 2391849 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | || ||| Sbjct 2391850 GCAACCACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGGTTA 2391909 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC---ACCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || ||| ||||| | | ||| | || Sbjct 2391910 AGCGTCTGTTCTCTTTCATCATTACCTCC---ACCGATACCAGTCCCTCTCTGCCTACCA 2391966 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||||||||||| ||||||||||| || || || ||| ||| || Sbjct 2391967 ACAGCATCAATCTCATCAACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAA 2392026 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || ||||| ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 2392027 AGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCGAG 2392086 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| || ||||| || | ||| || || | Sbjct 2392087 --ATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCC 2392144 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | ||||| || ||| ||||||| | ||| |||||| ||||| || Sbjct 2392145 CAGTACCGGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGA 2392204 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||| ||||| ||||| Sbjct 2392205 ACCTCTCAGGCTTCTTCAGAAACTCCAC 2392232 >seq8 Length=41758685 Score = 118 bits (130), Expect = 1e-21 Identities = 297/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | |||| ||||| ||||| | | |||||| || Sbjct 1370812 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTTGCA 1370871 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| ||| | | ||||| | | ||||| ||||||||||| || | | || || Sbjct 1370872 GCAACAACAATGACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGGTTC 1370931 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || || ||||| |||||||| || |||| |||| | | ||| | || Sbjct 1370932 AAGGTCTGCTCTCTTTCATCATTACCT---CCACCAATCCCAGTCCCTCTCTGCCTACCA 1370988 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||||||||| || | |||||||| || || ||| || || | | || Sbjct 1370989 ACAGCATCAATCTCGTCCACAAAGACAATGCACGGCGCATTCTCCTTAGCCTTCTTGAAA 1371048 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || ||||| ||||| ||||| ||||||||||| || || | | | ||| Sbjct 1371049 AGATCACGCACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGACCCCGAG 1371108 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| || |||||| ||| | |||||| || | Sbjct 1371109 --ATGGAAAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGGGTTTTAC 1371166 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | ||||| || ||| |||| ||| | ||| |||||| || || || Sbjct 1371167 CAGTACCGGGAGGACCAACGAGGAGGACACCTTTAGGGATCCGAGCGCCGACCGCAGTGA 1371226 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||||||||| ||||| Sbjct 1371227 ACCTCTCAGGCTTCTTGAGAAACTCCAC 1371254 >seq6 Length=39822476 Score = 111 bits (122), Expect = 2e-19 Identities = 216/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || || || ||||||||||| || Sbjct 32773955 AAACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT-- 32774012 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | || || ||||||||||||||||| || |||||| Sbjct 32774013 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATAAAAACAATA 32774072 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | ||| | || || | ||| | |||||| ||||||||||||| Sbjct 32774073 CAAGGCGCCTTGGCCTTGGCCTTCTCGAACAAATCCCTAACCCTAGAGGCACCCACACCA 32774132 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || || | ||| ||||| | | || | ||| || ||| || || | ||| || Sbjct 32774133 ACGAAAAGCTCAACAAACTCAGACGCCGCGCAGGAGAAGAACGGCACTCCGGCTTCTCCA 32774192 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 || | |||| || | || ||||| || || || || |||| |||| || ||| Sbjct 32774193 GCCACAGCTCTAGCTAACAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGAGACACCCT 32774252 Query 11837 CGGGGGATCTTGGCACC 11853 ||| |||||||| || Sbjct 32774253 TTGGGAATCTTGGCGCC 32774269 >seq2 Length=52886895 Score = 100 bits (110), Expect = 4e-16 Identities = 140/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || ||||| || || || || || |||||| || || |||||||| || Sbjct 45186989 GTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 45187048 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| |||||||||||||| || || || || Sbjct 45187049 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCA 45187108 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || ||||| | | | |||||||| | |||| | | || | ||| ||||| || Sbjct 45187109 AGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 45187165 Query 122850 CCATTTCGCCTTCTTC 122865 ||||| ||||||||| Sbjct 45187166 CCATTGGGCCTTCTTC 45187181 >seq7 Length=48366697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || |||||||| || | || || |||||| || || |||||||| || |||||| Sbjct 33023959 CCTTCGTCTCGGGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 33024018 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | |||||| |||||||||||||| || || || || || || Sbjct 33024019 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 33024078 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | | |||||||| | |||| | |||| | ||| |||| ||||||| Sbjct 33024079 GCGACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACGTCATGGCCCATTGG 33024135 Query 122857 GCCTTCTTC 122865 ||||||||| Sbjct 33024136 GCCTTCTTC 33024144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627773831745600