Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 125 9e-24 seq7 102 1e-16 seq8 91.5 2e-13 seq5 86.0 8e-12 >seq2 Length=52886895 Score = 125 bits (138), Expect = 9e-24 Identities = 192/271 (71%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 45186989 GTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 45187048 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| |||| || || || |||||||||||||| || || || Sbjct 45187049 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCA 45187108 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 |||||||| | || | ||| || || | | || | || | ||||||||| || Sbjct 45187109 AGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 45187165 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 45187166 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 45187225 Query 130267 TTC--TGATGGATCTTTGATGTACTTATCTA 130295 || || || || ||||||||| |||||| Sbjct 45187226 CTCCTTGTTG--TCCTTGATGTACGTATCTA 45187254 >seq7 Length=48366697 Score = 102 bits (112), Expect = 1e-16 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| |||||||| | || || |||||| | || |||||||| || |||||| Sbjct 33023959 CCTTCGTCTCGGGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 33024018 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| |||| || || || |||||||||||||| || || || ||||| Sbjct 33024019 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 33024078 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || | ||| || || | | || | ||| | |||| |||| ||||| || Sbjct 33024079 GCGACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACGTCATGGCCCATTGG 33024135 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||||| ||| ||| || |||| ||| | ||||| Sbjct 33024136 GCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGC 33024170 >seq8 Length=41758685 Score = 91.5 bits (100), Expect = 2e-13 Identities = 268/405 (66%), Gaps = 16/405 (4%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| | || | |||| |||||| |||||| | || || || Sbjct 1370812 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTTGCA 1370871 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 || | |||| || || || |||| ||||| |||||||||||||||||||| || Sbjct 1370872 GCAACAACAATGACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGG 1370928 Query 14180 TTGATGGTTTGTTCGCGTTCATCATT---CGCAGGCATACCACCCGCACTGCGTTGCTTA 14236 || | ||| || || | ||||||||| || || ||| | | || ||| || Sbjct 1370929 TTCAAGGTCTGCTCTCTTTCATCATTACCTCCACCAATCCCAGTCCCTCT---CTGCCTA 1370985 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAACTTC 14295 || || || ||||| || || | || || || || || ||| | | | | ||| Sbjct 1370986 CCAACAGCATCAATCTCGTCCACAAAGACAATGCACGGCGCATTCTCCTTAGCCTTCTTG 1371045 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 ||| | ||| ||||| ||| ||||| ||||| ||||||||||| || || | | | Sbjct 1371046 AAA-AGATCACGCACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGACCC 1371104 Query 14356 GGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 14414 | | || | | ||| || || | |||||| || |||||| ||| | |||||| | Sbjct 1371105 CG-AGATGGAAAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGGGTTT 1371163 Query 14415 TCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCC 14459 | || || || || || |||| ||| |||| ||||||| Sbjct 1371164 TACCAGTACCGGGAGGACCAACGAGGAGGACACCTTTAGGGATCC 1371208 >seq5 Length=46902585 Score = 86.0 bits (94), Expect = 8e-12 Identities = 322/497 (65%), Gaps = 16/497 (3%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| | | | |||| |||||| |||||| | ||| || || Sbjct 2378409 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 2378468 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 || | || | | || || |||| ||||| ||||||||||| |||| || || Sbjct 2378469 GCAACCACGATAACACCAGT---GTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGG 2378525 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGCTTA 14236 || | || ||||| | ||||||||| | | |||||| | | || ||| || Sbjct 2378526 TTAAGCGTCTGTTCTCTTTCATCATTACCTCCACCGATACCAGTCCCTCTC---TGCCTA 2378582 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 || || || ||||| ||||| | || || ||||| || || || ||| || Sbjct 2378583 CCAACAGCATCAATCTCATCAACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTG 2378642 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || | ||| || || ||| ||||| ||||| ||||||||||| ||||| | | | Sbjct 2378643 AAAAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCC 2378702 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 | | || | | ||| || || || |||||| || ||||| || | ||| || || Sbjct 2378703 G-AGATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTT 2378761 Query 14416 CCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGCCAA 14474 ||| || || || || ||||||| |||| ||||||| ||||| || | || Sbjct 2378762 CCCAGTACCGGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCG-CAG 2378820 Query 14475 AGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGT 14534 | | | ||||| | || || || ||||| | ||| || || | ||| || | | Sbjct 2378821 TGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAGTCTTGCTTGGCTTCAT 2378880 Query 14535 CGATGCCTTCAACGTCA 14551 ||| || |||||||| Sbjct 2378881 CGACTCCAGCAACGTCA 2378897 Score = 86.0 bits (94), Expect = 8e-12 Identities = 322/497 (65%), Gaps = 16/497 (3%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| | | | |||| |||||| |||||| | ||| || || Sbjct 2391790 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 2391849 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 || | || | | || || |||| ||||| ||||||||||| |||| || || Sbjct 2391850 GCAACCACGATAACACCAGT---GTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGG 2391906 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGCTTA 14236 || | || ||||| | ||||||||| | | |||||| | | || ||| || Sbjct 2391907 TTAAGCGTCTGTTCTCTTTCATCATTACCTCCACCGATACCAGTCCCTCTC---TGCCTA 2391963 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 || || || ||||| ||||| | || || ||||| || || || ||| || Sbjct 2391964 CCAACAGCATCAATCTCATCAACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTG 2392023 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || | ||| || || ||| ||||| ||||| ||||||||||| ||||| | | | Sbjct 2392024 AAAAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCC 2392083 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 | | || | | ||| || || || |||||| || ||||| || | ||| || || Sbjct 2392084 G-AGATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTT 2392142 Query 14416 CCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGCCAA 14474 ||| || || || || ||||||| |||| ||||||| ||||| || | || Sbjct 2392143 CCCAGTACCGGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCG-CAG 2392201 Query 14475 AGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGT 14534 | | | ||||| | || || || ||||| | ||| || || | ||| || | | Sbjct 2392202 TGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAGTCTTGCTTGGCTTCAT 2392261 Query 14535 CGATGCCTTCAACGTCA 14551 ||| || |||||||| Sbjct 2392262 CGACTCCAGCAACGTCA 2392278 Score = 86.0 bits (94), Expect = 8e-12 Identities = 132/188 (70%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | || || |||||| || ||| |||||||| || || ||| Sbjct 19044132 CCGTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATGAGCCCTCGTTTC 19044191 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| |||| || || ||||||||||||||||| || || ||||| Sbjct 19044192 TTGAGCCAGAAGATCGAGCAGAAGCTACCAGAGAAGAAGATCCCTTCGGAGCAGGCGAAG 19044251 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | | | ||| || |||| | || | || | |||| ||||||||||||| Sbjct 19044252 GCGACGCTCCTCTCCGCGAAGGTCTGAGA---TCCGTCGATCCACGTCATCGCCCACTGA 19044308 Query 130214 GCCTTTTT 130221 || || || Sbjct 19044309 GCTTTCTT 19044316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618180976750160