Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8 129 7e-25 seq2 116 4e-21 seq5 114 2e-20 seq3 113 5e-20 seq7 104 3e-17 seq1 100 3e-16 >seq8 Length=41758685 Score = 129 bits (142), Expect = 7e-25 Identities = 305/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| |||||| | | ||| || || Sbjct 1370812 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTTGCA 1370871 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | |||| | ||| || | | ||||| ||||||||||| ||||| || ||||| Sbjct 1370872 GCAACAACAATGACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGGTTC 1370931 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || || || | ||||||||| || |||| |||| | | ||| | || Sbjct 1370932 AAGGTCTGCTCTCTTTCATCATTACCT---CCACCAATCCCAGTCCCTCTCTGCCTACCA 1370988 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAA 9759 || ||||||||||| || | ||||| ||||| || ||| || || | ||| ||| Sbjct 1370989 ACAGCATCAATCTCGTCCACAAAGACAATGCACGGCGCATTCTCCTTAGCCTTCTTGAAA 1371048 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 ||||| || || | | || || ||||| ||||||||||| || || | | | | Sbjct 1371049 -AGATCACGCACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGACCCCG- 1371106 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 | || | | ||| || ||| | |||||| ||||||||| ||| | || || |||| Sbjct 1371107 AGATGGAAAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGGGTTTTAC 1371166 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 9938 | ||||| || ||| |||||||| ||||| || ||| ||||| || | Sbjct 1371167 CAGTACCGGGAGGACCAACGAGGAGGACACCTTTAGGGATCCGAGCGCCGACCGCAGTGA 1371226 Query 9939 ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | |||||||| | ||| ||||| ||||| | ||| Sbjct 1371227 ACCTCTCAGGCTTCTTGAGAAACTCCACCACTTC 1371260 >seq2 Length=52886895 Score = 116 bits (128), Expect = 4e-21 Identities = 143/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 ||||| || | ||||| ||||||||| | || | || | | || || ||| | Sbjct 45187180 AAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA---TCTCAGACTTTCGCCGAGAGG 45187124 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || | || || || || || || || ||||||||||| ||| ||||||| | || | Sbjct 45187123 ATCGTGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTC 45187064 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 |||||||||||||| || |||||||| || ||| ||||||||||||||| ||||| || Sbjct 45187063 TGGCTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGA 45187004 Query 94930 GACGAGGGACTCCAC 94944 ||||| || || ||| Sbjct 45187003 GACGAAGGCCTTCAC 45186989 >seq5 Length=46902585 Score = 114 bits (126), Expect = 2e-20 Identities = 141/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 94747 CAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAG 94806 ||||||||||| | ||||| |||| |||| | || | || | |||| || ||| Sbjct 19044319 CAAAAGAAAGCTCAGTGGGCGATGACGTGGATCGACGGA---TCTCAGACCTTCGCGGAG 19044263 Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 | | |||| || || || || || ||||||||||||||| ||||||| | || Sbjct 19044262 AGGAGCGTCGCCTTCGCCTGCTCCGAAGGGATCTTCTTCTCTGGTAGCTTCTGCTCGATC 19044203 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | ||||||||||| ||||| |||||||| ||| | ||||||||||||| | |||||| Sbjct 19044202 TTCTGGCTCAAGAAACGAGGGCTCATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCT 19044143 Query 94927 CGTGACGAGGGA 94938 || ||||| ||| Sbjct 19044142 CGAGACGACGGA 19044131 Score = 113 bits (124), Expect = 5e-20 Identities = 299/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | | | ||| ||||| |||||| | | || || || Sbjct 2378409 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 2378468 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||| ||| |||||| Sbjct 2378469 GCAACCACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGGTTA 2378528 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || ||| ||||| | | ||| | || Sbjct 2378529 AGCGTCTGTTCTCTTTCATCATTACCT---CCACCGATACCAGTCCCTCTCTGCCTACCA 2378585 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || |||||||||||||||| ||||| || || || || || || || || Sbjct 2378586 ACAGCATCAATCTCATCAACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAA 2378645 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || | | || || ||||| ||||||||||| ||||| | | | | | Sbjct 2378646 AGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCG-A 2378704 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || | | ||| || ||| || |||||| |||||||| || | || || || || Sbjct 2378705 GATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCC 2378764 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 9939 ||||| || ||| |||| || ||||| || ||| || || || | | Sbjct 2378765 AGTACCGGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAA 2378824 Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 |||||||| | ||| ||||| ||||| | ||| Sbjct 2378825 CCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 2378857 Score = 113 bits (124), Expect = 5e-20 Identities = 299/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | | | ||| ||||| |||||| | | || || || Sbjct 2391790 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 2391849 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||| ||| |||||| Sbjct 2391850 GCAACCACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGGTTA 2391909 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || ||| ||||| | | ||| | || Sbjct 2391910 AGCGTCTGTTCTCTTTCATCATTACCT---CCACCGATACCAGTCCCTCTCTGCCTACCA 2391966 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || |||||||||||||||| ||||| || || || || || || || || Sbjct 2391967 ACAGCATCAATCTCATCAACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAA 2392026 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || | | || || ||||| ||||||||||| ||||| | | | | | Sbjct 2392027 AGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCG-A 2392085 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || | | ||| || ||| || |||||| |||||||| || | || || || || Sbjct 2392086 GATGGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCC 2392145 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 9939 ||||| || ||| |||| || ||||| || ||| || || || | | Sbjct 2392146 AGTACCGGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAA 2392205 Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 |||||||| | ||| ||||| ||||| | ||| Sbjct 2392206 CCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 2392238 >seq3 Length=64984695 Score = 113 bits (124), Expect = 5e-20 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 94747 CAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAG 94806 ||||||||||| | ||||| |||| |||| | || | || | |||| || ||| Sbjct 52385827 CAAAAGAAAGCTCAGTGGGCGATGACGTGGATCGACGGA---TCTCAGACCTTCGCGGAG 52385883 Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 | |||| ||||| || | || || ||||||||||| ||| ||||||| | || Sbjct 52385884 AGGAGTGTCGCCTTTGCCTGCGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATC 52385943 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | ||||||||||| ||||| |||||||| ||| | ||||||||||||| | |||||| Sbjct 52385944 TTCTGGCTCAAGAAACGAGGGCTCATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCT 52386003 Query 94927 CGTGACGAGGG 94937 || ||||| || Sbjct 52386004 CGAGACGACGG 52386014 >seq7 Length=48366697 Score = 104 bits (114), Expect = 3e-17 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 ||||| || | ||||| |||| |||| | ||| | || | | || || ||| | Sbjct 33024143 AAGAAGGCCCAATGGGCCATGACGTGGATCGATGGA---TCTCAGACTTTCGCCGAGAGG 33024087 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || |||| || || || || || || ||||||||||| ||| ||||||| | || | Sbjct 33024086 ATCGTCGCCTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTC 33024027 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||| ||||||||||| |||||||| || | ||||||||||||| | ||||| || Sbjct 33024026 TGGCTTAAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCCCGA 33023967 Query 94930 GACGAGGG 94937 ||||| || Sbjct 33023966 GACGAAGG 33023959 >seq1 Length=43764888 Score = 100 bits (110), Expect = 3e-16 Identities = 201/290 (69%), Gaps = 10/290 (3%) Strand=Plus/Plus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 || ||||| ||| ||||||| || ||||| || ||| ||| | |||||||| || || Sbjct 18203526 AACTACCGTGAGGCTTACGGTCTTTTTGCCTGTAACGGGATCTTGTTCAACCACGAGTCC 18203585 Query 7421 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAAACAA-ATCAT 7479 ||| | || || | |||| || || | |||||| || ||| | | | |||| Sbjct 18203586 CCGCGCCGCGGAGAGAACTTCGTGACGAGGAAGATAAC-GAGAGCCTTGGGGAGGATCAA 18203644 Query 7480 GAAGGGT--GAAAAGGA-GTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTGGGG 7536 | |||| | | |||| | || || | || || | | ||| ||||||| ||||| Sbjct 18203645 GGTGGGTTTGCAGAGGAAGCTCTTTC---TCGGGAATCTCCAGGCGTCGAGAGACTGGGG 18203701 Query 7537 TCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGA 7596 |||| ||| ||||||||||| |||||||| ||||| || |||||| | || || || Sbjct 18203702 GTTCGCGGGGGATTATGTTGAAGCGATGTGGCTGATGCTGCAGCAAGAGAAGGCGGATGA 18203761 Query 7597 ATATGTAGTAGCAACGGGTGAGACCCATACAGT-GAGGCGGTTCATTGAG 7645 || || || || |||| ||| | ||||| || |||| | ||| ||||| Sbjct 18203762 TTACGTTGTGGCCACGGAGGAGTCGCATACCGTGGAGGAGTTTC-TTGAG 18203810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583021036066640