Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 163 3e-35 seq7 131 2e-25 seq3 96.9 4e-15 seq5 89.7 6e-13 >seq2 Length=52886895 Score = 163 bits (180), Expect = 3e-35 Identities = 377/557 (68%), Gaps = 21/557 (4%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||| | | |||| |||| |||||||| | || |||||| ||| ||| || Sbjct 45187537 TACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAA 45187478 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGA---CAAGCTCAATTACGACGAGCAGCAT 59690 | |||||| || |||| || ||||| ||| ||| | ||| |||| || Sbjct 45187477 GTCGACCTCTCCCAAGACACACGCGACTGGGAGAACAATCTCGACGACGGAGAGCGCCAC 45187418 Query 59691 TTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATA 59750 |||||||| ||||| ||||||||||| || || || || || | || ||| | Sbjct 45187417 TTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTTCTCGAGAATCTC 45187358 Query 59751 GACAT---GAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTAT 59807 | || | | | ||| || || ||| | ||||||| || | ||||||| || Sbjct 45187357 GCCACCCGGTTCATGTCC---GACGTGCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTC 45187301 Query 59808 CAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGT 59866 ||| ||| | |||| ||||||||| |||| |||| ||| || | |||| || | Sbjct 45187300 CAGATCGCG-ATCGAGAATATCCACTCGGAGATGTACAGTCTCTTGTTAGATACGTACAT 45187242 Query 59867 CAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTA 59925 |||||| | |||| || ||| ||||| || || ||||| |||| || || Sbjct 45187241 CAAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATCCCTTGC-GTCG 45187183 Query 59926 AACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCA----TTTGCACAA 59981 | || || ||||||||||| ||||||| | | ||| | ||| || || | Sbjct 45187182 CGAAGAAGGCCCAATGGGCCATGAAGTGGATC-GAC--GGATC-TCAGACTTTCGCCGAG 45187127 Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 | || | || || || ||||| ||||| ||||||||||| || ||||| | || Sbjct 45187126 AGGATCGTGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATC 45187067 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| |||||||| ||||||||||| || | ||||||||||||||||| || Sbjct 45187066 TTCTGGCTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCG 45187007 Query 60102 CGGGACGAGGGCCTCCA 60118 || ||||| ||||| || Sbjct 45187006 CGAGACGAAGGCCTTCA 45186990 >seq7 Length=48366697 Score = 131 bits (144), Expect = 2e-25 Identities = 365/550 (66%), Gaps = 20/550 (4%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||| | | |||| |||| ||||| || | || |||||| ||| ||| || Sbjct 33024497 TACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAAGCCTCTTTCTGGACCGCCGAAGAA 33024438 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 | |||||| || |||| || ||||| || ||||| ||| |||| || ||| Sbjct 33024437 GTCGACCTCTCCCAAGACAATCGCGACTGGGAGAATCTCAACGACGGAGAGCGACACTTC 33024378 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 ||||| ||||| ||||||||||| || || ||||| || |||| ||| | | | Sbjct 33024377 ATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTTTGGAGAATCTCGCC 33024318 Query 59754 ATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG 59810 | || ||| || || || | ||||||| || | ||||||| || ||| Sbjct 33024317 TCGCGGTTCATGTCC---GACGTGCAAGTCTCCGAGGCGCGTGCCTTCTACGGGTTCCAG 33024261 Query 59811 -TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAA 59869 ||| | ||| ||||||||| |||| |||| ||| || |||| | || |||| Sbjct 33024260 ATCGCG-ATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGACACGTACATCAA 33024202 Query 59870 GGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAAC 59928 ||| | |||| || || ||||| || || || || |||| || || Sbjct 33024201 GGACAACAAGGAGAGGGACCACCTTTTCCGCGCGATTGAAACCATCCCTTGC-GTCGCGA 33024143 Query 59929 AAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA----TTTGCACAACG 59983 | || || ||||||||||| |||||| || |||| | ||| || || | | Sbjct 33024142 AGAAGGCCCAATGGGCCATGACGTGGATCGA----TGGATC-TCAGACTTTCGCCGAGAG 33024088 Query 59984 TCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTT 60043 || | || || || ||||| ||||| ||||||||||| || ||||| | || || Sbjct 33024087 GATCGTCGCCTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTT 33024028 Query 60044 CTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCG 60103 |||||| || ||||| || |||||||| || | | |||||||||||| |||| ||||| Sbjct 33024027 CTGGCTTAAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCCCG 33023968 Query 60104 GGACGAGGGC 60113 ||||| ||| Sbjct 33023967 AGACGAAGGC 33023958 >seq3 Length=64984695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| |||| ||||| ||||||||||| || ||||| | || ||||||||| Sbjct 52385893 GCCTTTGCCTGCGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTC 52385952 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || || || || |||||||| || ||| |||||||||||| |||| || || ||||| Sbjct 52385953 AAGAAACGAGGGCTCATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCTCGAGACGAC 52386012 Query 60111 GGC 60113 ||| Sbjct 52386013 GGC 52386015 >seq5 Length=46902585 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 ||||| |||||||||||||| ||||| | || ||||||||||| || || || ||| Sbjct 19044238 GAAGGGATCTTCTTCTCTGGTAGCTTCTGCTCGATCTTCTGGCTCAAGAAACGAGGGCTC 19044179 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||||| || ||| |||||||||||| |||| || || ||||| || Sbjct 19044178 ATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCTCGAGACGACGG 19044132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548299315167840