Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 163 3e-35
seq7 131 2e-25
seq3 96.9 4e-15
seq5 89.7 6e-13
>seq2
Length=52886895
Score = 163 bits (180), Expect = 3e-35
Identities = 377/557 (68%), Gaps = 21/557 (4%)
Strand=Plus/Minus
Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633
|||||| | | |||| |||| |||||||| | || |||||| ||| ||| ||
Sbjct 45187537 TACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAA 45187478
Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGA---CAAGCTCAATTACGACGAGCAGCAT 59690
| |||||| || |||| || ||||| ||| ||| | ||| |||| ||
Sbjct 45187477 GTCGACCTCTCCCAAGACACACGCGACTGGGAGAACAATCTCGACGACGGAGAGCGCCAC 45187418
Query 59691 TTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATA 59750
|||||||| ||||| ||||||||||| || || || || || | || ||| |
Sbjct 45187417 TTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTTCTCGAGAATCTC 45187358
Query 59751 GACAT---GAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTAT 59807
| || | | | ||| || || ||| | ||||||| || | ||||||| ||
Sbjct 45187357 GCCACCCGGTTCATGTCC---GACGTGCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTC 45187301
Query 59808 CAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGT 59866
||| ||| | |||| ||||||||| |||| |||| ||| || | |||| || |
Sbjct 45187300 CAGATCGCG-ATCGAGAATATCCACTCGGAGATGTACAGTCTCTTGTTAGATACGTACAT 45187242
Query 59867 CAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTA 59925
|||||| | |||| || ||| ||||| || || ||||| |||| || ||
Sbjct 45187241 CAAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATCCCTTGC-GTCG 45187183
Query 59926 AACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCA----TTTGCACAA 59981
| || || ||||||||||| ||||||| | | ||| | ||| || || |
Sbjct 45187182 CGAAGAAGGCCCAATGGGCCATGAAGTGGATC-GAC--GGATC-TCAGACTTTCGCCGAG 45187127
Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041
| || | || || || ||||| ||||| ||||||||||| || ||||| | ||
Sbjct 45187126 AGGATCGTGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATC 45187067
Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101
||||||||||| |||||||| ||||||||||| || | ||||||||||||||||| ||
Sbjct 45187066 TTCTGGCTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCG 45187007
Query 60102 CGGGACGAGGGCCTCCA 60118
|| ||||| ||||| ||
Sbjct 45187006 CGAGACGAAGGCCTTCA 45186990
>seq7
Length=48366697
Score = 131 bits (144), Expect = 2e-25
Identities = 365/550 (66%), Gaps = 20/550 (4%)
Strand=Plus/Minus
Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633
|||||| | | |||| |||| ||||| || | || |||||| ||| ||| ||
Sbjct 33024497 TACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAAGCCTCTTTCTGGACCGCCGAAGAA 33024438
Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693
| |||||| || |||| || ||||| || ||||| ||| |||| || |||
Sbjct 33024437 GTCGACCTCTCCCAAGACAATCGCGACTGGGAGAATCTCAACGACGGAGAGCGACACTTC 33024378
Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753
||||| ||||| ||||||||||| || || ||||| || |||| ||| | | |
Sbjct 33024377 ATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTTTGGAGAATCTCGCC 33024318
Query 59754 ATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG 59810
| || ||| || || || | ||||||| || | ||||||| || |||
Sbjct 33024317 TCGCGGTTCATGTCC---GACGTGCAAGTCTCCGAGGCGCGTGCCTTCTACGGGTTCCAG 33024261
Query 59811 -TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAA 59869
||| | ||| ||||||||| |||| |||| ||| || |||| | || ||||
Sbjct 33024260 ATCGCG-ATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGACACGTACATCAA 33024202
Query 59870 GGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAAC 59928
||| | |||| || || ||||| || || || || |||| || ||
Sbjct 33024201 GGACAACAAGGAGAGGGACCACCTTTTCCGCGCGATTGAAACCATCCCTTGC-GTCGCGA 33024143
Query 59929 AAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA----TTTGCACAACG 59983
| || || ||||||||||| |||||| || |||| | ||| || || | |
Sbjct 33024142 AGAAGGCCCAATGGGCCATGACGTGGATCGA----TGGATC-TCAGACTTTCGCCGAGAG 33024088
Query 59984 TCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTT 60043
|| | || || || ||||| ||||| ||||||||||| || ||||| | || ||
Sbjct 33024087 GATCGTCGCCTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTT 33024028
Query 60044 CTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCG 60103
|||||| || ||||| || |||||||| || | | |||||||||||| |||| |||||
Sbjct 33024027 CTGGCTTAAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCCCG 33023968
Query 60104 GGACGAGGGC 60113
||||| |||
Sbjct 33023967 AGACGAAGGC 33023958
>seq3
Length=64984695
Score = 96.9 bits (106), Expect = 4e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050
|| ||||| |||| ||||| ||||||||||| || ||||| | || |||||||||
Sbjct 52385893 GCCTTTGCCTGCGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTC 52385952
Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110
|| || || || |||||||| || ||| |||||||||||| |||| || || |||||
Sbjct 52385953 AAGAAACGAGGGCTCATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCTCGAGACGAC 52386012
Query 60111 GGC 60113
|||
Sbjct 52386013 GGC 52386015
>seq5
Length=46902585
Score = 89.7 bits (98), Expect = 6e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065
||||| |||||||||||||| ||||| | || ||||||||||| || || || |||
Sbjct 19044238 GAAGGGATCTTCTTCTCTGGTAGCTTCTGCTCGATCTTCTGGCTCAAGAAACGAGGGCTC 19044179
Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112
||||| || ||| |||||||||||| |||| || || ||||| ||
Sbjct 19044178 ATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCTCGAGACGACGG 19044132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548299315167840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |