Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8 104 3e-17 seq7 91.5 2e-13 seq1 89.7 6e-13 seq4 87.8 2e-12 seq3 86.0 7e-12 seq12632 84.2 2e-11 >seq8 Length=41758685 Score = 104 bits (114), Expect = 3e-17 Identities = 280/421 (67%), Gaps = 12/421 (3%) Strand=Plus/Minus Query 124485 ACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGA 124544 ||||||| |||||| | | |||| ||| | ||| | | ||| |||| || | Sbjct 27904295 ACCTCGAGAAACTCCTCAACCGTATGCGACTCCTCGGTGGCCACGACGTAATCATCCGCC 27904236 Query 124545 ATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCG 124604 || |||||||| ||| | |||||| || | ||||||||| | ||| ||||||||| Sbjct 27904235 TTCTCCTGCTGCAGCATCATCCACATCGCCTCCACGTAGTCCCCCGCGAACCCCCAGTCT 27904176 Query 124605 CGCTTGGCATCCAGGTTTCCGAGCTCGAT-TGGCT-TG---GCCGTC-TTGTTCCACTCC 124658 | | || | ||||| ||||| || | || || |||| | ||| ||| ||| Sbjct 27904175 CTCGAAGCCTGGAGGTTCCCGAGGAAGAGCTTCCTCTGCAAGCCGACCTTGATCC--TCC 27904118 Query 124659 GCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGG 124718 |||| || || ||||| | |||||| || | ||||| ||| ||||||||| Sbjct 27904117 -CCAAGGCCCTCGTGATCTTCCTCGTCACGAAGTTCTCTCCGCGGCGCGGCGACTCGTGG 27904059 Query 124719 TTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATC 124778 ||||||| || || ||||||| || | ||||| | |||||||||||| || | Sbjct 27904058 TTGAACAAGATCCCGTTACACGCGAAGAGACCGTAGGCCTCGCGGTAGTTAACGGTGTAC 27903999 Query 124779 CAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCA 124838 |||| | || || || ||| || | || || || ||||| || || || |||| Sbjct 27903998 CAATGCGCAGCGACTTTTGACGCGGCGTAAGGAGATCTGGGGTGAAACGGCGTCGTTTCG 27903939 Query 124839 TTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTG 124898 || | || || || || || |||||||| |||| |||||||| ||| | ||| Sbjct 27903938 GACTGCGGAG---GCGGAGTCGCTCCGAACATCTCGGAAGATCCCGCCTGGTAGTACTTG 27903882 Query 124899 A 124899 | Sbjct 27903881 A 27903881 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 79626 GCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAATT 79684 |||||| ||||| |||| |||| ||||||||||||||||||||||||||| ||||| | Sbjct 15155069 GCTTTCATTGAGCGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACT 15155010 Query 79685 GAGCTACGAAAGC 79697 |||||| |||||| Sbjct 15155009 GAGCTATGAAAGC 15154997 >seq7 Length=48366697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 46814449 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 46814390 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 46814389 TGAGCTACGAGAGCA 46814375 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 40154505 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 40154446 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 40154445 TGAGCTATGAAAGC 40154432 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 41698849 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 41698908 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 41698909 TGAGCTATGAAAGC 41698922 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 40031120 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 40031061 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 40031060 CTGAGCTACGAGAGC 40031046 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||| ||||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 46026281 TGCTTTTATTGAGCGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 46026340 Query 79684 TGAGCTACGAAA 79695 ||||||| |||| Sbjct 46026341 TGAGCTATGAAA 46026352 >seq1 Length=43764888 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 35019039 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 35018980 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 35018979 TGAGCTACGAGAGC 35018966 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 8176364 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8176423 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 8176424 TGAGCTATGAAAGC 8176437 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 8176556 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8176615 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 8176616 TGAGCTATGAAAGC 8176629 >seq4 Length=53719093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 8575556 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8575497 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 8575496 TGAGCTATGAAAGCA 8575482 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 48517327 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 48517386 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 48517387 TGAGCTATGAAAGC 48517400 >seq3 Length=64984695 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 10746661 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10746720 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 10746721 TGAGCTATGAAAGC 10746734 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 57013135 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 57013194 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 57013195 TGAGCTATGAAAGC 57013208 >seq12632 Length=466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 79619 CCAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT- 79677 ||||| ||||||| |||| |||| |||| |||||||||||||||||| |||||||| Sbjct 221 CCAGA-TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACAGGTGCTCTA 279 Query 79678 ACCAATTGAGCTACGAAAGC 79697 ||||| ||||||| |||||| Sbjct 280 ACCAACTGAGCTATGAAAGC 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546991053182800