Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq1 86.0 5e-12 >seq3 Length=64984695 Score = 123 bits (136), Expect = 2e-23 Identities = 190/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 || |||||||| || || | | |||||||| || || || | || | |||||| Sbjct 32924573 TACACGTGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGTTCACACACGTGA 32924632 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 || | |||| | || || ||||||||| ||||||||||| || || || || ||||| Sbjct 32924633 GCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGGCCCATA 32924692 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 30073 ||| |||| | ||| || | ||| ||||||||||| || || ||| || ||||| | Sbjct 32924693 TCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 32924752 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 |||| ||||||||||||||| ||||| || | || |||||||| || | Sbjct 32924753 AACAT---GTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCAGAT 32924809 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTC 30163 | ||||| |||| || || || |||||| Sbjct 32924810 AATATGATACGCCGATCATCAGGATTGTTC 32924839 >seq1 Length=43764888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||| ||||| | || | || || || ||||| |||||||||||| ||||| || || Sbjct 2359068 GACATGAGCGAGGATACATGTAAGAAGGGAGTACGAGGCGATGTTAAACGGTACACCAAG 2359009 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||| || |||||||| | |||||||| Sbjct 2359008 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACGTAAAA 2358949 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAA-GTCTTTGGGGTTCC 30125 ||| | |||| |||||| |||||||| ||||| | | || ||| || |||| Sbjct 2358948 CTGAGCAAACAT---GTGGCATGGAGGAAGTGCCAT-CGCCTTAAGGTCAGAAGGATTCC 2358893 Query 30126 AGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 | || ||| || || |||| || || || |||||| |||| Sbjct 2358892 AAGCCGACATTATAATCCGCCGATCGTCAGGATTGTTCTTGAT 2358850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406147551553512