Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 147 1e-30 seq4 143 2e-29 seq3 140 2e-28 seq1 122 5e-23 seq9 120 2e-22 seq6 93.3 3e-14 >seq5 Length=46902585 Score = 147 bits (162), Expect = 1e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| ||||| | ||| ||||| |||||| |||||||| ||||| | | ||| || Sbjct 33725086 AGACGTAACACGAGATGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAATGTACGA 33725027 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || |||||||| || |||||||| ||||| ||||| | ||||||| Sbjct 33725026 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCAGGCGGGATTCCCTCC 33724967 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | || ||| || || ||||| ||||||||| || | || Sbjct 33724966 TTGTCTTGTATC-TTGGCCTTGACGTTATCGATGGTGTCGGAGCTCTCCACCTCGAGTGT 33724908 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||||| || ||||| || || ||||| ||||||||| Sbjct 33724907 GATCGTTTTTCCCGTTAAGGTCTTGACAAAGATCTGCATG 33724868 Score = 114 bits (126), Expect = 8e-21 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || |||||| || ||||| || || | || || || Sbjct 33725314 AGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGA 33725255 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | |||||| ||||| || || | || ||| Sbjct 33725254 CCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCC 33725195 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| || ||| ||||| |||||| || |||| || Sbjct 33725194 TTGTCTTGGATC-TTGGCCTTGACGTTATCAATCGTGTCGGAGCTCTCGACCTCCAGTGT 33725136 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || ||||| || ||||| || ||||| || |||||| Sbjct 33725135 GATGGTCTTACCAGTCAACGTCTTGACAAAGATTTGCATG 33725096 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| || ||||| ||||| | || |||| | |||| || || || Sbjct 33724844 ATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCTAGGGTTCTCCCGTCCTCGAGCTG 33724785 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || | | ||| || ||||| || | |||||||||||| ||| | Sbjct 33724784 CTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGTCT-TGAATCT 33724726 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | |||||| | || ||||| ||| ||||| || | ||| ||||| || || | Sbjct 33724725 TGGCTTTAACATTGTCGATCGTGTCAGAGCTTTCCACCTCAAGGGTGATCGTCTTTCCCG 33724666 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || || || || |||||||| Sbjct 33724665 TGAGTGTCTTAACGAAGATCTGCAT 33724641 >seq4 Length=53719093 Score = 143 bits (158), Expect = 2e-29 Identities = 166/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || ||||||||||||||| || || | | ||||| Sbjct 28156510 AGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCCGCCAATGTTCTG 28156451 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||| || || ||||| || || || | ||| |||||||| || | |||||| Sbjct 28156450 CCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCC 28156391 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT-CCACTTCCACGG 34666 |||||| |||| |||| ||| ||| | ||| || || ||||| |||| |||| | Sbjct 28156390 TTGTCTTGGATC-TTTGCTTTGACGTTGTCAATAGTATCGGAGCTCTCCCACCTCCAATG 28156332 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| || || ||||| || ||||| |||||||| Sbjct 28156331 TAATAGTTTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 28156292 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| | |||||| || ||||||||| ||||| ||||| | | Sbjct 7247417 CCACCACGAAGACGAAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCA 7247476 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| ||||| || || || || | | ||| ||||| || || Sbjct 7247477 AGAGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 7247536 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | || || | ||||||||| ||| || || Sbjct 7247537 ATCCCTTCCTTGTCCTGGATCTTC-GCCTTGACATTGTCTATTGTGTCTGAGCTTTCAAC 7247595 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| ||||| | || || |||||||||||||| Sbjct 7247596 CTCCAAAGTAATGGTTTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 7247643 >seq3 Length=64984695 Score = 140 bits (154), Expect = 2e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| |||||||| |||||| |||||||| || || | ||| || || Sbjct 59730859 AGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGA 59730800 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | |||||| |||||||| || | || ||| Sbjct 59730799 CCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCC 59730740 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| || ||| ||||| |||||||| |||| || Sbjct 59730739 TTGTCTTGGATC-TTGGCCTTGACGTTATCAATGGTGTCCGAACTCTCCACCTCCAGTGT 59730681 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || |||||||| || || ||||| |||||||| Sbjct 59730680 GATGGTCTTTCCGGTTAAGGTCTTGACAAAGATCTGCAT 59730642 Score = 120 bits (132), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| || |||||||| |||||| || ||||| || || | ||| || || Sbjct 59730631 AGACGCAACACTAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGA 59730572 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || |||||||| || | |||||| |||||||| || | || ||| Sbjct 59730571 CCATCCTCAAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCC 59730512 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| ||||| ||||| || || | || Sbjct 59730511 TTGTCTTGGATC-TTGGCCTTGACGTTGTCAATGGTGTCGGAACTCTCGACCTCTAGAGT 59730453 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || | || || ||||| ||||||||| Sbjct 59730452 AATCGTCTTTCCCGTCAGTGTCTTGACAAAGATCTGCATG 59730413 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| ||||| || |||||| || || || ||||| | | || | Sbjct 34861620 AGACGCAAGACCAAGTGGAGCGTAGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTG 34861679 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | || || ||||| || || | | ||| || ||||| || | ||||||| Sbjct 34861680 CCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGGATTCCCTCC 34861739 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||||| | ||||||| | || ||||| ||||||||| |||| || Sbjct 34861740 TTATCCTGGATCTTG-GCTTTAACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGT 34861798 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| ||||| || || |||||||||||| Sbjct 34861799 GATAGTCTTTCCGGTCAACGTCTTGACGAAAATCTGCATG 34861838 Score = 111 bits (122), Expect = 1e-19 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTC 34546 |||||||| ||||| ||||| || ||||||||| ||||| || || | ||||| | Sbjct 34861848 AGACGCAAGACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCCAAAGTCCT- 34861906 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 || |||||||||| || || ||||| || || | | ||| || ||||| || | || | Sbjct 34861907 GC-CGTCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCTT 34861965 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACG 34665 ||||||| |||||| | ||||||| | || ||||| ||| || || || | | Sbjct 34861966 CCTTGTCCTGGATCTTG-GCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCAAGG 34862024 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| | ||||||||||| |||||||| Sbjct 34862025 GTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCAT 34862065 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || ||||||||||||||| || |||| | || || | || ||| Sbjct 16418757 ACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCTGCTAAGGTGCGACCATCCTCA 16418816 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || | |||||| |||||||| || | || || |||||| | Sbjct 16418817 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGG 16418876 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | || ||| || ||| ||||| ||||||||| |||| || || || || Sbjct 16418877 ATC-TTGGCCTTCACGTTATCAATAGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTT 16418935 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | || ||||| || ||||||||| Sbjct 16418936 GCCGGTAAGAGTCTTCACGAAGATCTGCATG 16418966 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || |||| || || || || || || ||||| || || | || || | Sbjct 34861164 AGACGTAAGACCAGGTGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGCTAGAGTCCTT 34861223 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || |||||||| || || | ||| |||||||| || | |||||| Sbjct 34861224 CCATCCTCCAACTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCC 34861283 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | ||| ||| | ||| |||||| ||||||||| |||| || Sbjct 34861284 TTGTCTTGGATC-TTGGCTTTCACGTTGTCAATAGTGTCTGAGCTCTCCACCTCCAAAGT 34861342 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || || || || |||||||| |||||| Sbjct 34861343 AATCGTCTTCCCCGTCAAGGTCTTGACAAAAATTTGCATG 34861382 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| |||||| || ||||| || |||| | || || Sbjct 11141114 AGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGA 11141173 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | || ||| Sbjct 11141174 CCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCC 11141233 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| | || ||| | ||| ||||| ||||||||| || | || Sbjct 11141234 TTGTCTTGGATCTTG-GCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGTGT 11141292 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || || || || ||||||||||| Sbjct 11141293 GATGGTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCAT 11141331 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| || || || |||||| || ||||| ||||| | | || || Sbjct 34860708 AGACGAAGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGA 34860767 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | |||||| || ||||| || | || ||| Sbjct 34860768 CCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCC 34860827 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||||| | || || | ||| |||||| ||||||||| || | || Sbjct 34860828 TTGTCTTGAATCTTG-GCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGCGT 34860886 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| || || || || ||||||||||| Sbjct 34860887 GATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCAT 34860925 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| |||||||| |||||| || ||||| || || | || || || Sbjct 59730403 AGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGT 59730344 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || || | ||| || || || || | || ||| Sbjct 59730343 CCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGATCGGGGGGGATGCCTTCC 59730284 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | ||| ||| | || ||||| ||||||||| || | ||| Sbjct 59730283 TTATCCTGGATC-TTGGCTTTGACGTTGTCGATGGTGTCCGAGCTCTCCACCTCGAGGGT 59730225 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || |||||||| Sbjct 59730224 GATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 59730186 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||| |||||||||| || ||| || | | || || |||||| |||| ||||| Sbjct 34130379 TCCTTTTGGATGTTATAATATGCAAGCGTACCACCATCCTCGAGTTGTCTACCAGCAAAC 34130320 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | | |||| ||| | || | || ||||||||| |||||| |||| Sbjct 34130319 ATGATTCTCTGTAGGTTTTGTGGGATCCCTTCCTTGTCTTGAATCTTTATCTTTACATTC 34130260 Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 || ||||| ||| || ||||||| || || ||||||| || | |||||||||| Sbjct 34130259 TCAACAATGTCTAAGCTGTCAACTTCCAAGGCAATGATTTTACCAGTGAGCGTTTTCACA 34130200 Query 34696 AAAATCTGCAT 34706 || || ||||| Sbjct 34130199 AATATTTGCAT 34130189 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| |||||||||| || ||| || || | || || || | |||||| ||||| Sbjct 34698681 CTCCTTTTGGATGTTATAATATGCAAGCGTGCGACCATCCTCGAGGTTTTTACCAGCAAA 34698740 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 | | | |||| ||| || || | || ||||||||| |||||| | || || Sbjct 34698741 CGTGATTCTCTGTCGGTTTGGTGGGAGCCCTTCCTTGTCTTGAATCTTT-GCCTTCACAT 34698799 Query 34635 TAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || ||||| ||| || ||| | | ||| || |||||||| | | |||||||| Sbjct 34698800 TCTCAACAATGTCTGAGCTGTCAACTACTAAGGTAATGGTTTTACCAGAGAGCGTTTTCA 34698859 Query 34694 CAAAAATCTGCAT 34706 |||| || ||||| Sbjct 34698860 CAAATATTTGCAT 34698872 >seq1 Length=43764888 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| |||||| |||||||| ||||||| | || || Sbjct 35467684 AGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGA 35467625 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| |||||||| || | || ||| Sbjct 35467624 CCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCC 35467565 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| | || ||| | ||| ||||| ||||||||| |||| || Sbjct 35467564 TTGTCTTGGATCTTG-GCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGT 35467506 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || || ||||||||||||||||| Sbjct 35467505 GATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCAT 35467467 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| || ||||| || || | ||| |||| | || || | || Sbjct 35466758 ATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTTCTTCCATCCTCCAACTG 35466699 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || |||||||| || | | ||| |||||||| || | ||||||||| || |||||| Sbjct 35466698 CTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTT 35466639 Query 34623 TTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | |||||| | || || || ||| ||||| || | ||| || || || |||| Sbjct 35466638 G-GCCTTAACGTTGTCGATGGTATCAGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCGG 35466580 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | ||||||||||| |||||||| Sbjct 35466579 TGAGAGTTTTCACAAAGATCTGCAT 35466555 >seq9 Length=54679868 Score = 120 bits (132), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||||||||| ||||| ||| || |||||||| || || | | || || Sbjct 23042215 AGACGCAACACCAAATGAAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTACGA 23042274 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| ||||| || || | ||||||| Sbjct 23042275 CCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCC 23042334 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || ||| | ||| ||||| |||||| ||||| | ||| Sbjct 23042335 TTGTC-CTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACTTCGAGGGT 23042393 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || ||||| | || |||||||| ||||||||| Sbjct 23042394 GATCGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATG 23042433 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || ||| || |||||||| || || | | || || Sbjct 23042443 AGACGCAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTACGA 23042502 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || |||||||| ||||| || || | |||||| Sbjct 23042503 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCGGGAGGAATACCCTCC 23042562 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | ||| ||| | || ||||| ||||||||| || | || Sbjct 23042563 TTGTCTTGGATC-TTAGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGTGT 23042621 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || |||||||| Sbjct 23042622 GATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 23042660 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||| | || ||||| |||||| || ||||| ||||| | Sbjct 53991957 CCACCACGAAGACGCAGCACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 53991898 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || | | || ||||| |||||||| || || || | | |||||||||||| || Sbjct 53991897 AAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 53991838 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| || | || || | || |||||| |||||| || Sbjct 53991837 ATCCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTGTCTATCGTGTCTGAGCTCTCAAC 53991779 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| |||||| || || || || || || |||||||| || ||||| Sbjct 53991778 TTCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 53991731 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| | || || || |||||| || || || ||||| | ||| || || Sbjct 53991720 AGACGCAACACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGCGTACGA 53991661 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||| || || || || | | ||| ||||| || || | || ||| Sbjct 53991660 CCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCC 53991601 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||| | || || | ||| ||||| ||||||||| |||| || Sbjct 53991600 TTGTCCTGAATCTTC-GCCTTCACATTGTCAATCGTGTCAGAGCTCTCCACCTCCAAAGT 53991542 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| ||||| ||||| | || || |||||||||||||| Sbjct 53991541 TATTGTTTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 53991503 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||||||||| ||||| | || || || |||||| |||| ||||| Sbjct 40056122 CTCCTTTTGGATGTTATAATCAGAAAGCCTGTAATCATCCTCCAGTTGTCTACCAGCAAA 40056063 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT-TGTTTTAACG 34633 ||| | | ||| |||| || | | || ||||||||| ||| || | ||| ||| Sbjct 40056062 TATGAGTCTCTGGCGGTCTGGTGCGATCCCTTCCTTGTCTTGAATCATTGTCTTTAAACT 40056003 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 |||| | |||||| || | | ||||| | || | |||||| | | ||||||| Sbjct 40056002 GTAAA-TGGTGTCTGAGCGCCCAACTTCTAAGGCAGTGACTTTACCAGAGAGTGTTTTCA 40055944 Query 34694 CAAAAATCTGCAT 34706 |||| || ||||| Sbjct 40055943 CAAATATTTGCAT 40055931 >seq6 Length=39822476 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| |||||||| || || || ||| || || ||||| || || | | || || Sbjct 26071114 AGACGTAACACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAAGGTGCGA 26071055 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| || || || || || | |||||| |||||||| || | ||||| Sbjct 26071054 CCATCCTCGAGTTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCT 26070995 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||||| | || ||| | ||| || ||| |||||||| |||| || Sbjct 26070994 TTATCCTGAATCTTG-GCCTTCACGTTGTCAATAGTATCTGAACTCTCCACCTCCAAAGT 26070936 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| || || || ||||||||||||||| Sbjct 26070935 GATTGTCTTCCCGGTCAATGTCTTAACAAAAATCTGCATG 26070896 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || |||||| || ||||| ||||| | | ||| | Sbjct 26070886 AGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAATGTCCTG 26070827 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||| || || || ||||| || | | ||| ||||| || || | |||||| Sbjct 26070826 CCGTCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATACCCTCC 26070767 Query 34609 TTGTC 34613 ||||| Sbjct 26070766 TTGTC 26070762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314603456966438