Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3 129 5e-25 >seq3 Length=64984695 Score = 129 bits (142), Expect = 5e-25 Identities = 180/247 (73%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||||| |||| | || || |||| ||| ||| ||||| |||||||| || | Sbjct 32924627 ACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGG 32924686 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || |||| || ||||| | |||||| || |||||||| | ||| || ||||| Sbjct 32924687 CCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAAC 32924746 Query 6737 TG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || ||| | |||||||||| || ||||||||||| |||||| |||||||| || Sbjct 32924747 TGCGCAAACA-TGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGC 32924805 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-A 6854 | | | ||| | | |||||||| || ||||| ||||||| |||| |||| | Sbjct 32924806 AGATAATATGATACGCCGATCATCAGGATTGTTCTTCATCTTGTCGATTACGT-CTGCGA 32924864 Query 6855 GCTGGTC 6861 |||| || Sbjct 32924865 GCTGATC 32924871 Score = 129 bits (142), Expect = 5e-25 Identities = 180/247 (73%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 34484 GACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGT 34542 || ||||| |||| |||| ||||||| ||||| || |||||||| | | ||| | Sbjct 32924871 GATCAGCTCGCAG-ACGTAATCGACAAGATGAAGAACAATCCTGATGATCGGCGTATCAT 32924813 Query 34543 GATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCT 34602 | | || |||||||| |||||| ||||||||||| || |||||||||| | Sbjct 32924812 ATTATCTGCTTGGAACCCTTCTGATCTCAAGCTGATGGCGCTTCCTCCGTGCCACA-TGT 32924754 Query 34603 CTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAG 34661 ||| || ||||| || ||| | |||||||| || |||||| | ||||| || |||| | Sbjct 32924753 TTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTCGTGCCAGATGTATCAGCGTTCGGCGG 32924694 Query 34662 ACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCG 34721 | ||||| | || |||||||| ||||| ||| ||| |||| || || | |||| ||| Sbjct 32924693 ATATGGGCCTTGGTGTGCCGTTTAACATCGCTTCCTACTCTCTTCTTACTTGCATGCTCG 32924634 Query 34722 CTCATGT 34728 |||| || Sbjct 32924633 CTCACGT 32924627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448078130533920