Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 3e-14 seq3 89.7 4e-13 >seq7 Length=48366697 Score = 93.3 bits (102), Expect = 3e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| |||||||| | ||| |||| ||| || || ||||| Sbjct 46712430 TTAAACGGTACACCAAGACCCATATCTGCTGACCGCTGATACATTTGACACGAAAGCTCT 46712489 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 |||||||||||| ||||||| | ||||| || ||||| || |||| | || Sbjct 46712490 CCGTTTGCAACAAAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGG 46712549 Query 118705 TGGGCAGGATTCCAGGCTG 118723 | | ||||||||| |||| Sbjct 46712550 TCAGAAGGATTCCAAGCTG 46712568 >seq3 Length=64984695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| || |||||||||||||| ||| | || |||||||| ||| | || ||| Sbjct 32924572 ATACACGTGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGTTCACACACGTG 32924631 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 ||| | |||| | || | | | |||| || | ||||| || ||||| || ||||| Sbjct 32924632 AGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGGCCCAT 32924691 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 || || || | ||| |||| ||||| ||||||||||| | || ||||| ||||| Sbjct 32924692 ATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAACTGCGC 32924751 Query 118668 TATGATGTGACATGGAGGCAGAACCAT 118694 | ||||| || ||||| || |||| Sbjct 32924752 AAACATGTGGCACGGAGGAAGCGCCAT 32924778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414310678475704