Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 4e-12 >seq3 Length=64984695 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || || || || || |||| || |||||| | Sbjct 34862065 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 34862006 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| || || ||||| ||||| |||| ||| | Sbjct 34862005 GACACCATCGACAAC--GTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATC 34861948 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || |||||||| || | || |||| | | ||| |||| |||| Sbjct 34861947 AGCAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCAGGACTTTGGCCGACTACA 34861888 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| || | || ||||| |||||| | ||||| ||| Sbjct 34861887 ACATCCAAAAGGAGTCTACGCTCCACTTGGTCTTGCGTCTACGTGGAGGC 34861838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355719771017322