Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq8 93.3 4e-14 seq3 89.7 4e-13 seq7 87.8 2e-12 seq5 86.0 5e-12 >seq6 Length=39822476 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 23704390 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCCAGCTG 23704331 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || || ||||||||||| | || | || || |||||| ||| || Sbjct 23704330 TTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 23704271 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | || ||| ||||| || || | ||||| | || |||| Sbjct 23704270 GGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTCCCCG 23704212 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 | || |||||||| ||||| ||||||||| || || Sbjct 23704211 TTAGGGTTTTAACGAAGATCTGCATCTTTGCGGCG 23704177 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/154 (72%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||| | || |||||| | || || |||||||| || || || ||| || Sbjct 26070912 TAACAAAAATCTG--CATGCCTCCACGTAGACGCAACACCAAGTGAAGGGTCGACTCCTT 26070855 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || || || ||||| || | ||| | |||| |||||||| || || ||||| || || Sbjct 26070854 CTGGATGTTGTAATCAGCCAATGTCCTGCCGTCTTCAAGCTGCTTTCCAGCAAAGATCAG 26070795 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 | ||||||||||| ||| | | ||| |||||| Sbjct 26070794 CCTCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 26070761 >seq8 Length=41758685 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || || ||||| || || ||| |||| || ||||| Sbjct 33346240 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGTCCGTCTTCGAGCTG 33346181 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || || ||||||||||||| || | | || |||||| ||| || Sbjct 33346180 CTTCCCGGCGAAAATCAGTCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTT 33346121 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | || ||| ||||| || || | ||||| |||| ||||| Sbjct 33346120 GGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTCCCCGT 33346061 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 || ||||| || ||||| ||||||||| || || Sbjct 33346060 TAGGGTTTTCACGAAGATCTGCATCTTTGCGGCG 33346027 >seq3 Length=64984695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||||| || || ||||| || || | || || | || || Sbjct 11141350 CACCAAGTGAAGAGTTGATTCTTTCTGGATGTTATAGTCAGCCAAAGTACGACCATCCTC 11141409 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||| || || || |||||||||||||| | || | | |||||||||| Sbjct 11141410 AAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTG 11141469 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| ||| | ||| | | | || ||| |||||| || | ||||| | | Sbjct 11141470 GATTTTGGCTTTCA-CGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGAGTGATCGTCT 11141528 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || | || || || ||||||||||| Sbjct 11141529 TTCCTGTTAAAGTCTTCACGAAGATTTGCAT 11141559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| || || || || ||| || || || || || |||||||| || || | Sbjct 59730628 CGCAACACTAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCA 59730569 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || |||||||| || || ||||| || ||||||||||||| ||| ||| | || || || Sbjct 59730568 TCCTCAAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGGATCCCT-TCCTT 59730510 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||| ||| || |||| ||| | | | || ||| ||| || || | || | Sbjct 59730509 GTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAACTCTCGACCTCTAGAGTAA 59730451 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | ||||||||||| || || |||||||| ||||| Sbjct 59730450 TCGTCTTTCCCGTCAGTGTCTTGACAAAGATCTGCAT 59730414 >seq7 Length=48366697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | |||||| || ||||| ||| || || || || || || || Sbjct 20455720 CCTCCTCTCAGCCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 20455779 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 || || | |||| || ||||| || || ||||| || ||||||||||||| ||||||| Sbjct 20455780 AGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG 20455839 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || |||||| || || || | | | | ||| ||| || || || Sbjct 20455840 ATCCCT-TCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCAAC 20455898 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| |||||||| ||||| ||| Sbjct 20455899 CTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 20455950 >seq5 Length=46902585 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || ||| || || || || || ||||| || || || | Sbjct 33725311 CGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACCA 33725252 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| || || || || || |||||||||||||| | || | || || ||| Sbjct 33725251 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTG 33725192 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| || |||| | | | ||| ||| ||| || |||| ||||| Sbjct 33725191 TCTTGGATCTTGGCCTTGACGTTATCAATCGTGTCGGAGCTCTCGACCTCCAGTGTGATG 33725132 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| ||| || |||||||||||||| Sbjct 33725131 GTCTTACCAGTCAACGTCTTGACAAAGATTTGCAT 33725097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429373438928918